miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7244 5' -54.4 NC_001900.1 + 3910 0.78 0.173282
Target:  5'- aCAUCGAGU--UCGUCGGCGAGCUGGc -3'
miRNA:   3'- gGUGGUUCGguAGCGGUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 36444 0.66 0.719591
Target:  5'- cUCACCGGGCCGcagcUCGCC---GAGCUu- -3'
miRNA:   3'- -GGUGGUUCGGU----AGCGGuugCUCGAcc -5'
7244 5' -54.4 NC_001900.1 + 15956 0.66 0.730294
Target:  5'- gCCACgAAGCCcagaagcugAUCGCCGc---GCUGGa -3'
miRNA:   3'- -GGUGgUUCGG---------UAGCGGUugcuCGACC- -5'
7244 5' -54.4 NC_001900.1 + 40724 0.65 0.768938
Target:  5'- cCC-CCAAGCCcagcggucagcgauGUCGUCAgcgccGCGAGCg-- -3'
miRNA:   3'- -GGuGGUUCGG--------------UAGCGGU-----UGCUCGacc -5'
7244 5' -54.4 NC_001900.1 + 20941 0.71 0.430711
Target:  5'- cUCACCGgguucguccGGCgGUCGUCAACcuGGCUGGa -3'
miRNA:   3'- -GGUGGU---------UCGgUAGCGGUUGc-UCGACC- -5'
7244 5' -54.4 NC_001900.1 + 11748 0.71 0.450299
Target:  5'- aUCACCGAGCUg--GagAACGAGCUGGg -3'
miRNA:   3'- -GGUGGUUCGGuagCggUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 46152 0.7 0.533081
Target:  5'- -gACCAGGCCGUUGCgCGAagcggcagcuuCGAGgUGGu -3'
miRNA:   3'- ggUGGUUCGGUAGCG-GUU-----------GCUCgACC- -5'
7244 5' -54.4 NC_001900.1 + 11149 0.7 0.533081
Target:  5'- aCACCGAGaCCGUgGUCGaccucuggaACGAgGCUGGc -3'
miRNA:   3'- gGUGGUUC-GGUAgCGGU---------UGCU-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 46110 0.68 0.652818
Target:  5'- gCCGCgAAGguagaugugaccuCCAUCGCC---GAGCUGGu -3'
miRNA:   3'- -GGUGgUUC-------------GGUAGCGGuugCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 10442 0.67 0.708799
Target:  5'- -gGCUAcuCCAUCGCCGagcGCGAggagaugcgccGCUGGg -3'
miRNA:   3'- ggUGGUucGGUAGCGGU---UGCU-----------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 3102 0.67 0.683708
Target:  5'- -gACCGAcgugcucaagcagcGCC-UCGCCAagGCGAGCggcgGGg -3'
miRNA:   3'- ggUGGUU--------------CGGuAGCGGU--UGCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 34672 0.69 0.54384
Target:  5'- uCCGCCcAGUgcauCAUCGCCAuGCGAGCcGa -3'
miRNA:   3'- -GGUGGuUCG----GUAGCGGU-UGCUCGaCc -5'
7244 5' -54.4 NC_001900.1 + 40023 0.75 0.251903
Target:  5'- -gGCCucguAGCCGUCGCCGACGAuGUcGGu -3'
miRNA:   3'- ggUGGu---UCGGUAGCGGUUGCU-CGaCC- -5'
7244 5' -54.4 NC_001900.1 + 2261 0.67 0.708799
Target:  5'- aCgGCCAGGUCGagGUCAGCGAcgagcaGUUGGc -3'
miRNA:   3'- -GgUGGUUCGGUagCGGUUGCU------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 32233 0.72 0.41069
Target:  5'- aCCGCCAcGCCcggugGUUGCCcgugacgaccaucGGCGAGUUGGu -3'
miRNA:   3'- -GGUGGUuCGG-----UAGCGG-------------UUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 6008 0.69 0.54384
Target:  5'- uCgGCgCGAGCCggUGaCCuccGCGAGCUGGa -3'
miRNA:   3'- -GgUG-GUUCGGuaGC-GGu--UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 8175 0.67 0.708799
Target:  5'- gCACCGAGaCgGUCGCCGAgaaggcguacguCGAGUggcaGGa -3'
miRNA:   3'- gGUGGUUC-GgUAGCGGUU------------GCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 14138 0.66 0.719591
Target:  5'- gCCACCGAGUacgacuCAUCGCCcGCacuGGCgcgGGu -3'
miRNA:   3'- -GGUGGUUCG------GUAGCGGuUGc--UCGa--CC- -5'
7244 5' -54.4 NC_001900.1 + 37371 0.71 0.428779
Target:  5'- uCCACCGagacgGGCUcggguaguccaucagGUCGCCGAuguggacgaccucguCGGGCUGGg -3'
miRNA:   3'- -GGUGGU-----UCGG---------------UAGCGGUU---------------GCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 44237 0.7 0.501294
Target:  5'- aCACCGuaAGUCAUCGCgAccGCGAGCg-- -3'
miRNA:   3'- gGUGGU--UCGGUAGCGgU--UGCUCGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.