miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7244 5' -54.4 NC_001900.1 + 1266 0.66 0.750347
Target:  5'- gCACCuGAGCUGUcgacgguucgcacCGUCGACgcuGAGCUGGa -3'
miRNA:   3'- gGUGG-UUCGGUA-------------GCGGUUG---CUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 2261 0.67 0.708799
Target:  5'- aCgGCCAGGUCGagGUCAGCGAcgagcaGUUGGc -3'
miRNA:   3'- -GgUGGUUCGGUagCGGUUGCU------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 2503 1.13 0.000565
Target:  5'- cCCACCAAGCCAUCGCCAACGAGCUGGg -3'
miRNA:   3'- -GGUGGUUCGGUAGCGGUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 2900 0.69 0.587497
Target:  5'- aCCACCucgaagcuGCCGcuUCGCgCAACGGcCUGGu -3'
miRNA:   3'- -GGUGGuu------CGGU--AGCG-GUUGCUcGACC- -5'
7244 5' -54.4 NC_001900.1 + 3031 0.68 0.642845
Target:  5'- -uGCCAugcGCCG-CGCuCGGCG-GCUGGg -3'
miRNA:   3'- ggUGGUu--CGGUaGCG-GUUGCuCGACC- -5'
7244 5' -54.4 NC_001900.1 + 3102 0.67 0.683708
Target:  5'- -gACCGAcgugcucaagcagcGCC-UCGCCAagGCGAGCggcgGGg -3'
miRNA:   3'- ggUGGUU--------------CGGuAGCGGU--UGCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 3910 0.78 0.173282
Target:  5'- aCAUCGAGU--UCGUCGGCGAGCUGGc -3'
miRNA:   3'- gGUGGUUCGguAGCGGUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 4477 0.66 0.719591
Target:  5'- uCCGCU-GGCacuaCGCCAACGAcGUUGGa -3'
miRNA:   3'- -GGUGGuUCGgua-GCGGUUGCU-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 5795 0.65 0.770976
Target:  5'- cCUACaCAucGGCCA-CGCCAAgguagcggaggacCGAGaCUGGg -3'
miRNA:   3'- -GGUG-GU--UCGGUaGCGGUU-------------GCUC-GACC- -5'
7244 5' -54.4 NC_001900.1 + 6008 0.69 0.54384
Target:  5'- uCgGCgCGAGCCggUGaCCuccGCGAGCUGGa -3'
miRNA:   3'- -GgUG-GUUCGGuaGC-GGu--UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 7286 0.77 0.215099
Target:  5'- gCCACCGcAGCCAUCGCCcuCGccgccGGuCUGGg -3'
miRNA:   3'- -GGUGGU-UCGGUAGCGGuuGC-----UC-GACC- -5'
7244 5' -54.4 NC_001900.1 + 8175 0.67 0.708799
Target:  5'- gCACCGAGaCgGUCGCCGAgaaggcguacguCGAGUggcaGGa -3'
miRNA:   3'- gGUGGUUC-GgUAGCGGUU------------GCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 8983 0.66 0.719591
Target:  5'- gCCACUAcGCCA-CGCUGGCguuccGAGCUGc -3'
miRNA:   3'- -GGUGGUuCGGUaGCGGUUG-----CUCGACc -5'
7244 5' -54.4 NC_001900.1 + 9646 0.76 0.220896
Target:  5'- aCCACCGggaguucaaGGCUGcUCGCagcuCAACGAGCUGGg -3'
miRNA:   3'- -GGUGGU---------UCGGU-AGCG----GUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 10442 0.67 0.708799
Target:  5'- -gGCUAcuCCAUCGCCGagcGCGAggagaugcgccGCUGGg -3'
miRNA:   3'- ggUGGUucGGUAGCGGU---UGCU-----------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 11149 0.7 0.533081
Target:  5'- aCACCGAGaCCGUgGUCGaccucuggaACGAgGCUGGc -3'
miRNA:   3'- gGUGGUUC-GGUAgCGGU---------UGCU-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 11748 0.71 0.450299
Target:  5'- aUCACCGAGCUg--GagAACGAGCUGGg -3'
miRNA:   3'- -GGUGGUUCGGuagCggUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 14138 0.66 0.719591
Target:  5'- gCCACCGAGUacgacuCAUCGCCcGCacuGGCgcgGGu -3'
miRNA:   3'- -GGUGGUUCG------GUAGCGGuUGc--UCGa--CC- -5'
7244 5' -54.4 NC_001900.1 + 15307 0.76 0.23289
Target:  5'- aCGCCGAGgaCAUCguggagucaGCCAACGAGCUGa -3'
miRNA:   3'- gGUGGUUCg-GUAG---------CGGUUGCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 15956 0.66 0.730294
Target:  5'- gCCACgAAGCCcagaagcugAUCGCCGc---GCUGGa -3'
miRNA:   3'- -GGUGgUUCGG---------UAGCGGUugcuCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.