miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7252 5' -54.3 NC_001900.1 + 1209 0.66 0.749709
Target:  5'- aCCgAGCAcCgCGAGGuuCGCGUcacgGCACGCGa -3'
miRNA:   3'- -GG-UCGUuG-GCUCCu-GUGUA----CGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 46031 0.66 0.749709
Target:  5'- cCCAGCcGCCGAGcgcGGCGCAUG---GCAa -3'
miRNA:   3'- -GGUCGuUGGCUC---CUGUGUACgugCGU- -5'
7252 5' -54.3 NC_001900.1 + 3643 0.66 0.7391
Target:  5'- cCCGGCAugGCCGGuGGAgGCuucagGUACGUc -3'
miRNA:   3'- -GGUCGU--UGGCU-CCUgUGua---CGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 17685 0.66 0.7391
Target:  5'- cUCGGCAcgauGCUGAcGGGCGCucUGCAgGCu -3'
miRNA:   3'- -GGUCGU----UGGCU-CCUGUGu-ACGUgCGu -5'
7252 5' -54.3 NC_001900.1 + 23381 0.66 0.717558
Target:  5'- uCCaAGCGGCCGGuGAC-CGUGC-CGCc -3'
miRNA:   3'- -GG-UCGUUGGCUcCUGuGUACGuGCGu -5'
7252 5' -54.3 NC_001900.1 + 32431 0.66 0.717558
Target:  5'- aCAGCuccguaaacGCCGGGGGCACAUGgAUucccaGCu -3'
miRNA:   3'- gGUCGu--------UGGCUCCUGUGUACgUG-----CGu -5'
7252 5' -54.3 NC_001900.1 + 44030 0.66 0.70665
Target:  5'- -gGGCAACUGuAGGACACAU-CACa-- -3'
miRNA:   3'- ggUCGUUGGC-UCCUGUGUAcGUGcgu -5'
7252 5' -54.3 NC_001900.1 + 17019 0.67 0.695667
Target:  5'- gCGGCAGCCGAGacCAUgAUGCcCGCGc -3'
miRNA:   3'- gGUCGUUGGCUCcuGUG-UACGuGCGU- -5'
7252 5' -54.3 NC_001900.1 + 4367 0.67 0.684619
Target:  5'- gCCAGCGGCCuggcugccgcaGGGGAcCGCGUucCACGCu -3'
miRNA:   3'- -GGUCGUUGG-----------CUCCU-GUGUAc-GUGCGu -5'
7252 5' -54.3 NC_001900.1 + 44008 0.67 0.681295
Target:  5'- aCCgGGCcACCGGGGAUguccaucgucaucaGCGUGCAaGCGg -3'
miRNA:   3'- -GG-UCGuUGGCUCCUG--------------UGUACGUgCGU- -5'
7252 5' -54.3 NC_001900.1 + 6359 0.67 0.673521
Target:  5'- aCCAGCAGCgCaAGGAUg---GCACGCu -3'
miRNA:   3'- -GGUCGUUG-GcUCCUGuguaCGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 14704 0.67 0.662381
Target:  5'- cCCuGCAACCuAGGGCACAU-CAaccuCGCGg -3'
miRNA:   3'- -GGuCGUUGGcUCCUGUGUAcGU----GCGU- -5'
7252 5' -54.3 NC_001900.1 + 35195 0.67 0.661266
Target:  5'- aCCAGCucuUCGGGGuagacgaGCACcgGCugGUAc -3'
miRNA:   3'- -GGUCGuu-GGCUCC-------UGUGuaCGugCGU- -5'
7252 5' -54.3 NC_001900.1 + 8923 0.68 0.617641
Target:  5'- gCGGCAGCgGuccugcuGGACGCGgcUGCugGCc -3'
miRNA:   3'- gGUCGUUGgCu------CCUGUGU--ACGugCGu -5'
7252 5' -54.3 NC_001900.1 + 1096 0.68 0.617641
Target:  5'- gCGGCGGugccccuggaacCCGAGGACGCAacaGCACccgGCAa -3'
miRNA:   3'- gGUCGUU------------GGCUCCUGUGUa--CGUG---CGU- -5'
7252 5' -54.3 NC_001900.1 + 21060 0.68 0.606463
Target:  5'- aCCAGC--CCGAGGGCucc-GCACGUc -3'
miRNA:   3'- -GGUCGuuGGCUCCUGuguaCGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 2702 0.68 0.584185
Target:  5'- gCCAGCGGCCaGAGGcuuCGCGacgacugGCGCgGCAa -3'
miRNA:   3'- -GGUCGUUGG-CUCCu--GUGUa------CGUG-CGU- -5'
7252 5' -54.3 NC_001900.1 + 434 0.68 0.584185
Target:  5'- aCAGCAcccauACCGGGcACAUaacgagcagccuAUGCACGCGg -3'
miRNA:   3'- gGUCGU-----UGGCUCcUGUG------------UACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 16255 0.68 0.584185
Target:  5'- gUCAGCAguACCGAGGuugggaugaGgACcgGUACGCGc -3'
miRNA:   3'- -GGUCGU--UGGCUCC---------UgUGuaCGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 3406 0.68 0.583075
Target:  5'- aCCAGguGuacaucaCCGGGGcCACAggugGCACGUAc -3'
miRNA:   3'- -GGUCguU-------GGCUCCuGUGUa---CGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.