miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7254 5' -60 NC_001900.1 + 23916 0.66 0.470817
Target:  5'- cCUGGCcuucccAGCCccagcGCCGGAagCcAGCGCCGa -3'
miRNA:   3'- aGGCCG------UUGG-----CGGCCUa-GaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 23346 0.66 0.470817
Target:  5'- aCCGGCGGCgGCuaCGGAUCgGGCagagGCUa -3'
miRNA:   3'- aGGCCGUUGgCG--GCCUAGaUCG----CGGc -5'
7254 5' -60 NC_001900.1 + 30981 0.66 0.470817
Target:  5'- cCUGGguGCUGCCcaucgaGGAUCUGGagauGCUGg -3'
miRNA:   3'- aGGCCguUGGCGG------CCUAGAUCg---CGGC- -5'
7254 5' -60 NC_001900.1 + 42863 0.66 0.470817
Target:  5'- -aCGGCAGauccaCGUCGGG-CUGGaCGCCu -3'
miRNA:   3'- agGCCGUUg----GCGGCCUaGAUC-GCGGc -5'
7254 5' -60 NC_001900.1 + 1423 0.66 0.470817
Target:  5'- -gCGGCGACCGCCaGcgCguugaaCGCCGc -3'
miRNA:   3'- agGCCGUUGGCGGcCuaGauc---GCGGC- -5'
7254 5' -60 NC_001900.1 + 23585 0.66 0.451407
Target:  5'- gCCuGCAGCCucaCCGGGgaUGGUGCCGa -3'
miRNA:   3'- aGGcCGUUGGc--GGCCUagAUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 18856 0.66 0.423137
Target:  5'- gCCGGaAGCCGCCuucacgagcGGGUCaucgcccgcuGCGCCGa -3'
miRNA:   3'- aGGCCgUUGGCGG---------CCUAGau--------CGCGGC- -5'
7254 5' -60 NC_001900.1 + 10121 0.66 0.42129
Target:  5'- cUCGGCugccgagAACUGCUGGAUCUugccuucGGCGUCc -3'
miRNA:   3'- aGGCCG-------UUGGCGGCCUAGA-------UCGCGGc -5'
7254 5' -60 NC_001900.1 + 24067 0.67 0.413952
Target:  5'- cCCGGCAgggACCGUCGcGcaGUaCUGGCGCgGc -3'
miRNA:   3'- aGGCCGU---UGGCGGC-C--UA-GAUCGCGgC- -5'
7254 5' -60 NC_001900.1 + 9196 0.67 0.404891
Target:  5'- aUCCGGCGAUCGCCcgagacgagauGGUCUcGGCGuUCGa -3'
miRNA:   3'- -AGGCCGUUGGCGGc----------CUAGA-UCGC-GGC- -5'
7254 5' -60 NC_001900.1 + 5679 0.67 0.404891
Target:  5'- cUCaGCGACCGCCGcgaccucgaaacGGUCacGCGCCGg -3'
miRNA:   3'- aGGcCGUUGGCGGC------------CUAGauCGCGGC- -5'
7254 5' -60 NC_001900.1 + 17052 0.67 0.395956
Target:  5'- gCCGaguGCGACCacaCCGGcUCcAGCGCCGa -3'
miRNA:   3'- aGGC---CGUUGGc--GGCCuAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 20997 0.67 0.387149
Target:  5'- cCCGGUgagccaggAGCCGCCGaaggcGGUCUcGGUGCCc -3'
miRNA:   3'- aGGCCG--------UUGGCGGC-----CUAGA-UCGCGGc -5'
7254 5' -60 NC_001900.1 + 1132 0.67 0.378472
Target:  5'- cCCGGCAAggaGCCGGggCaGGCGgCGu -3'
miRNA:   3'- aGGCCGUUgg-CGGCCuaGaUCGCgGC- -5'
7254 5' -60 NC_001900.1 + 33944 0.67 0.378472
Target:  5'- aCCGG-AugCGCCGGAUgaAGUaCCGg -3'
miRNA:   3'- aGGCCgUugGCGGCCUAgaUCGcGGC- -5'
7254 5' -60 NC_001900.1 + 33055 0.67 0.369926
Target:  5'- gCUGGCcACCGCCGccgCUAcCGCCGc -3'
miRNA:   3'- aGGCCGuUGGCGGCcuaGAUcGCGGC- -5'
7254 5' -60 NC_001900.1 + 13373 0.68 0.361514
Target:  5'- aUCCGGCGucggAUC-CCaGAUCUGGaCGCCa -3'
miRNA:   3'- -AGGCCGU----UGGcGGcCUAGAUC-GCGGc -5'
7254 5' -60 NC_001900.1 + 21598 0.68 0.361514
Target:  5'- aCgGGC-ACUGCUGGAUCggagaucGCGUCGg -3'
miRNA:   3'- aGgCCGuUGGCGGCCUAGau-----CGCGGC- -5'
7254 5' -60 NC_001900.1 + 6226 0.68 0.353236
Target:  5'- cCCGGCAuccugggcAUCGCCcuGAUCUGGgGCgGg -3'
miRNA:   3'- aGGCCGU--------UGGCGGc-CUAGAUCgCGgC- -5'
7254 5' -60 NC_001900.1 + 43823 0.68 0.329213
Target:  5'- aCCGGaa--CGCCGcuUCUGGCGUCGg -3'
miRNA:   3'- aGGCCguugGCGGCcuAGAUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.