miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7254 5' -60 NC_001900.1 + 1423 0.66 0.470817
Target:  5'- -gCGGCGACCGCCaGcgCguugaaCGCCGc -3'
miRNA:   3'- agGCCGUUGGCGGcCuaGauc---GCGGC- -5'
7254 5' -60 NC_001900.1 + 9261 0.75 0.113907
Target:  5'- cUCgGGCGAUCGCCGGAUC-AGCGaucuccuccuguCCGg -3'
miRNA:   3'- -AGgCCGUUGGCGGCCUAGaUCGC------------GGC- -5'
7254 5' -60 NC_001900.1 + 29656 0.74 0.127052
Target:  5'- gCCGGCGGCUGCCGGuggaccgcUCUcggacguacucGGCGCUGa -3'
miRNA:   3'- aGGCCGUUGGCGGCCu-------AGA-----------UCGCGGC- -5'
7254 5' -60 NC_001900.1 + 402 0.73 0.149418
Target:  5'- aUCCGGCGGuuGCCGGAUCaauuccccGGCccuuguuggGCCGg -3'
miRNA:   3'- -AGGCCGUUggCGGCCUAGa-------UCG---------CGGC- -5'
7254 5' -60 NC_001900.1 + 10599 0.71 0.205119
Target:  5'- cCUGG-GACCGUCGGGUC-GGCGUCGa -3'
miRNA:   3'- aGGCCgUUGGCGGCCUAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 6605 0.7 0.2645
Target:  5'- gCCGGUuggauGCCGUugaGGAUCUGGCugGCCa -3'
miRNA:   3'- aGGCCGu----UGGCGg--CCUAGAUCG--CGGc -5'
7254 5' -60 NC_001900.1 + 33324 0.7 0.270479
Target:  5'- -aCGGCAGCuacuccgCGCCGuGG-CUGGUGCCGa -3'
miRNA:   3'- agGCCGUUG-------GCGGC-CUaGAUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 20997 0.67 0.387149
Target:  5'- cCCGGUgagccaggAGCCGCCGaaggcGGUCUcGGUGCCc -3'
miRNA:   3'- aGGCCG--------UUGGCGGC-----CUAGA-UCGCGGc -5'
7254 5' -60 NC_001900.1 + 17052 0.67 0.395956
Target:  5'- gCCGaguGCGACCacaCCGGcUCcAGCGCCGa -3'
miRNA:   3'- aGGC---CGUUGGc--GGCCuAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 23916 0.66 0.470817
Target:  5'- cCUGGCcuucccAGCCccagcGCCGGAagCcAGCGCCGa -3'
miRNA:   3'- aGGCCG------UUGG-----CGGCCUa-GaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 42863 0.66 0.470817
Target:  5'- -aCGGCAGauccaCGUCGGG-CUGGaCGCCu -3'
miRNA:   3'- agGCCGUUg----GCGGCCUaGAUC-GCGGc -5'
7254 5' -60 NC_001900.1 + 30981 0.66 0.470817
Target:  5'- cCUGGguGCUGCCcaucgaGGAUCUGGagauGCUGg -3'
miRNA:   3'- aGGCCguUGGCGG------CCUAGAUCg---CGGC- -5'
7254 5' -60 NC_001900.1 + 23585 0.66 0.451407
Target:  5'- gCCuGCAGCCucaCCGGGgaUGGUGCCGa -3'
miRNA:   3'- aGGcCGUUGGc--GGCCUagAUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 18856 0.66 0.423137
Target:  5'- gCCGGaAGCCGCCuucacgagcGGGUCaucgcccgcuGCGCCGa -3'
miRNA:   3'- aGGCCgUUGGCGG---------CCUAGau--------CGCGGC- -5'
7254 5' -60 NC_001900.1 + 10121 0.66 0.42129
Target:  5'- cUCGGCugccgagAACUGCUGGAUCUugccuucGGCGUCc -3'
miRNA:   3'- aGGCCG-------UUGGCGGCCUAGA-------UCGCGGc -5'
7254 5' -60 NC_001900.1 + 23346 0.66 0.470817
Target:  5'- aCCGGCGGCgGCuaCGGAUCgGGCagagGCUa -3'
miRNA:   3'- aGGCCGUUGgCG--GCCUAGaUCG----CGGc -5'
7254 5' -60 NC_001900.1 + 19781 0.71 0.215992
Target:  5'- gUUCGcCAACCGCCGGcUCaAGaCGCCGg -3'
miRNA:   3'- -AGGCcGUUGGCGGCCuAGaUC-GCGGC- -5'
7254 5' -60 NC_001900.1 + 1670 0.71 0.215992
Target:  5'- gUUCGGCAAgggccacgucCCGCCGG-UCUAcuccGCGCUGg -3'
miRNA:   3'- -AGGCCGUU----------GGCGGCCuAGAU----CGCGGC- -5'
7254 5' -60 NC_001900.1 + 8634 0.71 0.221612
Target:  5'- cUCUGGuCGGCUGCCGGGUCUccgacGGCcuGCUGu -3'
miRNA:   3'- -AGGCC-GUUGGCGGCCUAGA-----UCG--CGGC- -5'
7254 5' -60 NC_001900.1 + 29593 0.7 0.239221
Target:  5'- aCCGGCAGCCGCCGGcccAUC--GgGuuGa -3'
miRNA:   3'- aGGCCGUUGGCGGCC---UAGauCgCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.