miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 36705 0.68 0.531867
Target:  5'- cGCCGCGACcgUGCGuucuugugcaGGUACGgCaGCUu -3'
miRNA:   3'- aCGGCGCUGuaGCGC----------UUAUGCgG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 32683 0.68 0.521315
Target:  5'- gGCCaGCGAacucCGCGAGUuCGuCUGCCg -3'
miRNA:   3'- aCGG-CGCUgua-GCGCUUAuGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 37023 0.7 0.440325
Target:  5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3'
miRNA:   3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5'
7255 5' -56.1 NC_001900.1 + 6276 0.76 0.17521
Target:  5'- aGCCGCGaACAUCgGCGAcauCGUCGCUg -3'
miRNA:   3'- aCGGCGC-UGUAG-CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13282 0.67 0.607462
Target:  5'- cGCUGaCGACGUUGUGAcguuGUGgGCCaaggaGCCu -3'
miRNA:   3'- aCGGC-GCUGUAGCGCU----UAUgCGG-----CGG- -5'
7255 5' -56.1 NC_001900.1 + 47074 0.67 0.57477
Target:  5'- cGCUGCGACGUaggucggGCuGAAgaaGUCGCCa -3'
miRNA:   3'- aCGGCGCUGUAg------CG-CUUaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 8715 0.69 0.490175
Target:  5'- -cCCGCGAguUCGUGG--ACGCUGCa -3'
miRNA:   3'- acGGCGCUguAGCGCUuaUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 46350 0.77 0.157156
Target:  5'- uUGCCGCGccaguCGUCGCGAAgccucugGCCGCUg -3'
miRNA:   3'- -ACGGCGCu----GUAGCGCUUaug----CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25670 0.67 0.57477
Target:  5'- cGCCGCGACGUgagGCGGcacgGUcACcgGCCGCUu -3'
miRNA:   3'- aCGGCGCUGUAg--CGCU----UA-UG--CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 15432 0.78 0.140802
Target:  5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3'
miRNA:   3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1342 0.68 0.500463
Target:  5'- aGCgUGCGGCGUUcaacgcgcugGCGGu--CGCCGCCc -3'
miRNA:   3'- aCG-GCGCUGUAG----------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 30026 0.68 0.552122
Target:  5'- cGCCGggaugccagugauCGACAUgCGCGAGguccGCGCCuGCa -3'
miRNA:   3'- aCGGC-------------GCUGUA-GCGCUUa---UGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 5688 0.69 0.479987
Target:  5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3'
miRNA:   3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5'
7255 5' -56.1 NC_001900.1 + 7819 0.69 0.45993
Target:  5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3'
miRNA:   3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 15007 0.71 0.36698
Target:  5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3'
miRNA:   3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10346 0.73 0.280658
Target:  5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3'
miRNA:   3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 45923 0.67 0.607462
Target:  5'- gGCCGCGAgGaucUCGCGGuccuCGCCuUCg -3'
miRNA:   3'- aCGGCGCUgU---AGCGCUuau-GCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 13719 0.67 0.607462
Target:  5'- cGCCGCGAUGU-GCGAccACGaaGCg -3'
miRNA:   3'- aCGGCGCUGUAgCGCUuaUGCggCGg -5'
7255 5' -56.1 NC_001900.1 + 19549 0.67 0.597623
Target:  5'- cGCCGUGGCcgUGgGAGgaacugcccaaggagACGCUGCg -3'
miRNA:   3'- aCGGCGCUGuaGCgCUUa--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.