Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7259 | 3' | -60 | NC_001900.1 | + | 45712 | 0.66 | 0.489962 |
Target: 5'- aGGCaagaagaACGUCCaCGCUGGcCUGg-CCGUg -3' miRNA: 3'- -CCGg------UGCAGG-GCGGCCaGAUgaGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 36827 | 0.66 | 0.470363 |
Target: 5'- cGGCCACGUCUgGgaGGUCUgaaACUUgacaGCc -3' miRNA: 3'- -CCGGUGCAGGgCggCCAGA---UGAGg---CG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 323 | 0.66 | 0.467458 |
Target: 5'- gGGCCGgGgaauugauccggcaaCCGCCGGaUCUAgcgCCGCg -3' miRNA: 3'- -CCGGUgCag-------------GGCGGCC-AGAUga-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 32235 | 0.66 | 0.460714 |
Target: 5'- cGCCACG-CCCGgUGG-UUGC-CCGUg -3' miRNA: 3'- cCGGUGCaGGGCgGCCaGAUGaGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 34771 | 0.67 | 0.441738 |
Target: 5'- uGGCagGCGgugUUCGCCGGUCgGCU-CGCa -3' miRNA: 3'- -CCGg-UGCa--GGGCGGCCAGaUGAgGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 45922 | 0.67 | 0.432417 |
Target: 5'- uGGCCGCGaggaUCUCG-CGGUCcucgcCUUCGCg -3' miRNA: 3'- -CCGGUGC----AGGGCgGCCAGau---GAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 23885 | 0.67 | 0.432417 |
Target: 5'- cGGCCAgGgcacCCCGaguuCGGUC-AC-CCGCg -3' miRNA: 3'- -CCGGUgCa---GGGCg---GCCAGaUGaGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 41587 | 0.67 | 0.432417 |
Target: 5'- aGGUCACGUCCaGCU--UCUggGCUCCGg -3' miRNA: 3'- -CCGGUGCAGGgCGGccAGA--UGAGGCg -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 40140 | 0.67 | 0.432417 |
Target: 5'- aGCCGCGUCCaGCaGGaCcGCUgCCGCg -3' miRNA: 3'- cCGGUGCAGGgCGgCCaGaUGA-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 31668 | 0.67 | 0.432417 |
Target: 5'- aGGUC-CGcCUCGCgGuGUCgagcugACUCCGCa -3' miRNA: 3'- -CCGGuGCaGGGCGgC-CAGa-----UGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 13733 | 0.67 | 0.431491 |
Target: 5'- -aCCACGaagcggaUCCU-CCGGUCUGCUaCUGCg -3' miRNA: 3'- ccGGUGC-------AGGGcGGCCAGAUGA-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 24163 | 0.67 | 0.423212 |
Target: 5'- uGCCACGUCUuguCGCCGcGcCagUACUgCGCg -3' miRNA: 3'- cCGGUGCAGG---GCGGC-CaG--AUGAgGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 13322 | 0.67 | 0.414125 |
Target: 5'- aGGCCAUGUguuacUCC-UCGGUCgcagGCUCCuGCu -3' miRNA: 3'- -CCGGUGCA-----GGGcGGCCAGa---UGAGG-CG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 28121 | 0.67 | 0.396317 |
Target: 5'- gGGCCucACGgCCUGUgaCGGUggcgGCUCCGCa -3' miRNA: 3'- -CCGG--UGCaGGGCG--GCCAga--UGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 19265 | 0.67 | 0.396317 |
Target: 5'- gGGaCCACgGUCCUGgCuGUCgcgagACUCCGUg -3' miRNA: 3'- -CC-GGUG-CAGGGCgGcCAGa----UGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 41843 | 0.68 | 0.3876 |
Target: 5'- aGCCAuCGcccUCgCCGCCGGUCUggGCUUgGUc -3' miRNA: 3'- cCGGU-GC---AG-GGCGGCCAGA--UGAGgCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 24832 | 0.68 | 0.37901 |
Target: 5'- uGCCGC--CCgCGCCGGUCUG-UCCGa -3' miRNA: 3'- cCGGUGcaGG-GCGGCCAGAUgAGGCg -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 717 | 0.68 | 0.370549 |
Target: 5'- uGCCACGggCCGCagCGGUCUGgaacguCUaCCGCa -3' miRNA: 3'- cCGGUGCagGGCG--GCCAGAU------GA-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 38519 | 0.68 | 0.362218 |
Target: 5'- cGCCAUGUCCCGCgaguagcgGGUCagUGCgaCCGUg -3' miRNA: 3'- cCGGUGCAGGGCGg-------CCAG--AUGa-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 31888 | 0.69 | 0.338013 |
Target: 5'- cGGCCucccucucgACGgaaCCGCuCGGUCUcCUCgGCg -3' miRNA: 3'- -CCGG---------UGCag-GGCG-GCCAGAuGAGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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