miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7262 3' -52.2 NC_001900.1 + 8264 0.66 0.858336
Target:  5'- cCUGCCACuCGACGUAcgccuucucggcGACCGucucggugcCGGGAu- -3'
miRNA:   3'- -GACGGUG-GCUGCAU------------CUGGU---------GUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 44771 0.66 0.858336
Target:  5'- -gGCCAgCGGCcUGGcuGCCGCAGGGGa -3'
miRNA:   3'- gaCGGUgGCUGcAUC--UGGUGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 46006 0.66 0.858336
Target:  5'- -aGCgCGaaGGCGaGGACCGCGAGAu- -3'
miRNA:   3'- gaCG-GUggCUGCaUCUGGUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 29760 0.66 0.858336
Target:  5'- --cCCACCGcCGUAGACC-CGGccGAAGu -3'
miRNA:   3'- gacGGUGGCuGCAUCUGGuGUU--CUUC- -5'
7262 3' -52.2 NC_001900.1 + 33949 0.66 0.849683
Target:  5'- -cGCgGCUGACGgguACCACGucgAGAAGg -3'
miRNA:   3'- gaCGgUGGCUGCaucUGGUGU---UCUUC- -5'
7262 3' -52.2 NC_001900.1 + 25588 0.66 0.840788
Target:  5'- gCUGCCcCCG-CGUGGuggucACCAgGAGAGc -3'
miRNA:   3'- -GACGGuGGCuGCAUC-----UGGUgUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 15110 0.66 0.840788
Target:  5'- -aGCCACCGgcuggucgaGCGUcGGCCACAccAGccGAGg -3'
miRNA:   3'- gaCGGUGGC---------UGCAuCUGGUGU--UC--UUC- -5'
7262 3' -52.2 NC_001900.1 + 23655 0.66 0.840788
Target:  5'- -gGCUACCGGCGUAgaggcucuGACCACu----- -3'
miRNA:   3'- gaCGGUGGCUGCAU--------CUGGUGuucuuc -5'
7262 3' -52.2 NC_001900.1 + 24061 0.66 0.840788
Target:  5'- gUGCCGCCGuuGgGGAUCuGCAGGAu- -3'
miRNA:   3'- gACGGUGGCugCaUCUGG-UGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 41151 0.66 0.839886
Target:  5'- -gGUCACCGGCcUGGcCCGCAacgucucGGAGGa -3'
miRNA:   3'- gaCGGUGGCUGcAUCuGGUGU-------UCUUC- -5'
7262 3' -52.2 NC_001900.1 + 6734 0.66 0.831661
Target:  5'- -gGCCuucCCGAUGUGG-CCGucgguCGAGAAGg -3'
miRNA:   3'- gaCGGu--GGCUGCAUCuGGU-----GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 3067 0.66 0.831661
Target:  5'- --cCCGCCGACcc-GACCGgCGGGAAGg -3'
miRNA:   3'- gacGGUGGCUGcauCUGGU-GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 1680 0.66 0.830736
Target:  5'- -cGCCACCGGCcgagaagccGACCucgaacaGCGAGGAGa -3'
miRNA:   3'- gaCGGUGGCUGcau------CUGG-------UGUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 23226 0.66 0.826078
Target:  5'- uCUGCCAUCGcCGagcugcaggcucgccUGGACgCACAGGAc- -3'
miRNA:   3'- -GACGGUGGCuGC---------------AUCUG-GUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 42827 0.66 0.822311
Target:  5'- cCUGgUGCCGAUGgacgAGGuCCGCGAGAu- -3'
miRNA:   3'- -GACgGUGGCUGCa---UCU-GGUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 23876 0.67 0.81275
Target:  5'- -aGCCgACCGGagccCGUcgucGGACCACAGGGc- -3'
miRNA:   3'- gaCGG-UGGCU----GCA----UCUGGUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 35768 0.67 0.81275
Target:  5'- -cGCCGCCGACGUAcuGCUcCAGGucGu -3'
miRNA:   3'- gaCGGUGGCUGCAUc-UGGuGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 32667 0.67 0.802987
Target:  5'- --aCCACauccuCGACGUGGGCCAUGAGucGg -3'
miRNA:   3'- gacGGUG-----GCUGCAUCUGGUGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 23394 0.67 0.793035
Target:  5'- -gGCCaucagGCCGA-GUGGACCGacCAGGGAGc -3'
miRNA:   3'- gaCGG-----UGGCUgCAUCUGGU--GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 31292 0.67 0.793035
Target:  5'- -cGUCGCUGACGgcacGGCCAagaAGGAGGu -3'
miRNA:   3'- gaCGGUGGCUGCau--CUGGUg--UUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.