miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 13657 0.69 0.147748
Target:  5'- cAGCGGGCuccgaucaaguACCCGCCGGgguuucuCCUGG-CGGUc -3'
miRNA:   3'- -UCGCCCG-----------UGGGCGGCU-------GGGCUgGCCG- -5'
7266 3' -65.8 NC_001900.1 + 9370 0.69 0.148129
Target:  5'- uGGaCGGGCACCgugaCGCCGAuggccUCUGGUCGGCg -3'
miRNA:   3'- -UC-GCCCGUGG----GCGGCU-----GGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3353 0.68 0.164117
Target:  5'- uGCGGGCgACCUGUuccuCGaACUggaGACCGGCg -3'
miRNA:   3'- uCGCCCG-UGGGCG----GC-UGGg--CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 5723 0.68 0.16707
Target:  5'- cGGCGGGCuCaccaaccucgaugaCCGCCGACgCCGGuacaacCUGGCc -3'
miRNA:   3'- -UCGCCCGuG--------------GGCGGCUG-GGCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 47389 0.68 0.168349
Target:  5'- cAGUGGGCAaggguucuCCUGCCcgGACgCGACCGcGUu -3'
miRNA:   3'- -UCGCCCGU--------GGGCGG--CUGgGCUGGC-CG- -5'
7266 3' -65.8 NC_001900.1 + 43557 0.68 0.17268
Target:  5'- aGGCGGcGCACCgaGCUGG-CCGGCCGa- -3'
miRNA:   3'- -UCGCC-CGUGGg-CGGCUgGGCUGGCcg -5'
7266 3' -65.8 NC_001900.1 + 6498 0.68 0.17268
Target:  5'- cGGCGcGGUcCCCcaGCuCGGCCCG-CUGGCc -3'
miRNA:   3'- -UCGC-CCGuGGG--CG-GCUGGGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1268 0.68 0.177109
Target:  5'- cGGCGGGU--UCGgUGGuuCGACCGGCa -3'
miRNA:   3'- -UCGCCCGugGGCgGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 14460 0.68 0.177109
Target:  5'- cGCGGGCACCgacacgaaacCGCCuGACCCcgaauacauccuGACCcgagccgccaucGGCg -3'
miRNA:   3'- uCGCCCGUGG----------GCGG-CUGGG------------CUGG------------CCG- -5'
7266 3' -65.8 NC_001900.1 + 1360 0.68 0.177109
Target:  5'- cGCuGGCGgUCGCCGcCCgCGACCaGCa -3'
miRNA:   3'- uCGcCCGUgGGCGGCuGG-GCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 25089 0.68 0.181639
Target:  5'- -aCGGGCACCgGgaccaCCGGCCaaACCGGUg -3'
miRNA:   3'- ucGCCCGUGGgC-----GGCUGGgcUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 960 0.67 0.191007
Target:  5'- cGCGa-CugCUGCUGGCCuaCGGCCGGCu -3'
miRNA:   3'- uCGCccGugGGCGGCUGG--GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 25000 0.67 0.191007
Target:  5'- cAGUGGGUAUCa-CCGGuuUGGCCGGUg -3'
miRNA:   3'- -UCGCCCGUGGgcGGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 30564 0.67 0.191007
Target:  5'- cGCuGGCA-CCGCUGguGCCCGacgugaGCCGGCc -3'
miRNA:   3'- uCGcCCGUgGGCGGC--UGGGC------UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3940 0.67 0.191007
Target:  5'- cGCcGGUACCCGCCuccacggcgaACgCGGCCGGUc -3'
miRNA:   3'- uCGcCCGUGGGCGGc---------UGgGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 16603 0.67 0.194385
Target:  5'- gAGCGGGagcugucgGCCgacguuccggucaaCGCCGACCUGAacgCGGCc -3'
miRNA:   3'- -UCGCCCg-------UGG--------------GCGGCUGGGCUg--GCCG- -5'
7266 3' -65.8 NC_001900.1 + 14276 0.67 0.195848
Target:  5'- gAGaCGGcGuCACCCGCCGugCuCGAaccaacCUGGCc -3'
miRNA:   3'- -UC-GCC-C-GUGGGCGGCugG-GCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 41743 0.67 0.195848
Target:  5'- cGGCGucggaGGUacACCCGaCCaaGCCCaGACCGGCg -3'
miRNA:   3'- -UCGC-----CCG--UGGGC-GGc-UGGG-CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 27261 0.67 0.197815
Target:  5'- --aGGGguUuuGCCGaagcagcuugacugcGCCCGACCGGg -3'
miRNA:   3'- ucgCCCguGggCGGC---------------UGGGCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 27572 0.67 0.199798
Target:  5'- aAGaCGGuGCGCCgcuacauCGCCGACggccggcucaaggCCGugCGGCu -3'
miRNA:   3'- -UC-GCC-CGUGG-------GCGGCUG-------------GGCugGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.