miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 29900 0.7 0.327192
Target:  5'- uCCGGUcGCCCGagagCGCGGCcaGGACGCg -3'
miRNA:   3'- -GGCCA-UGGGCggagGUGCCG--CUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 45258 0.7 0.334953
Target:  5'- gUGGgcUCCGCUggCUACGGaGAACGCa -3'
miRNA:   3'- gGCCauGGGCGGa-GGUGCCgCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 34995 0.69 0.350067
Target:  5'- gCGGcUGCCCaGCCcUCGCGGgaguccucgaucaCGAACGCa -3'
miRNA:   3'- gGCC-AUGGG-CGGaGGUGCC-------------GCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 40496 0.69 0.374056
Target:  5'- aCCGGcgcCCCGCUgguguUCCugcacgggcucuCGGUGAGCGCc -3'
miRNA:   3'- -GGCCau-GGGCGG-----AGGu-----------GCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 12688 0.69 0.376601
Target:  5'- aCGGUcGCCCGCUguucaucgagucgacCUACGGUGAGgcCGCg -3'
miRNA:   3'- gGCCA-UGGGCGGa--------------GGUGCCGCUU--GCG- -5'
7269 3' -59.1 NC_001900.1 + 16317 0.69 0.381725
Target:  5'- cUCGGUACUgcugaccaccucgaCG-CUCCGCGuaGAACGCg -3'
miRNA:   3'- -GGCCAUGG--------------GCgGAGGUGCcgCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 2743 0.69 0.384304
Target:  5'- aCGuGUGCCCacagucaCCUCCugGGUGGA-GCa -3'
miRNA:   3'- gGC-CAUGGGc------GGAGGugCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 23324 0.69 0.387761
Target:  5'- gCCGGUGugguCCUguGCgUCCAggcgagccugcagcuCGGCGAugGCa -3'
miRNA:   3'- -GGCCAU----GGG--CGgAGGU---------------GCCGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 6651 0.68 0.401791
Target:  5'- cUCGGgccugGCCUGCCUgCCgauACGGC--ACGCg -3'
miRNA:   3'- -GGCCa----UGGGCGGA-GG---UGCCGcuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 13129 0.68 0.401791
Target:  5'- gCCGcGUgaacgGCCC-CCUCC-CGGUGGAUGUc -3'
miRNA:   3'- -GGC-CA-----UGGGcGGAGGuGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 33137 0.68 0.401791
Target:  5'- uCCGGUGgCgGCgguagCgGCGGCGGugGCc -3'
miRNA:   3'- -GGCCAUgGgCGga---GgUGCCGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 34703 0.68 0.410723
Target:  5'- aCCGGcgaACaCCGCCUgCCACcacacacuGcGCGAugGCg -3'
miRNA:   3'- -GGCCa--UG-GGCGGA-GGUG--------C-CGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 15098 0.68 0.410723
Target:  5'- gCGGUGCCUGCUUC---GGCGA-CGUa -3'
miRNA:   3'- gGCCAUGGGCGGAGgugCCGCUuGCG- -5'
7269 3' -59.1 NC_001900.1 + 12545 0.68 0.410723
Target:  5'- gUCGGUGCCgUGCaucgCCGCGccguCGAACGCc -3'
miRNA:   3'- -GGCCAUGG-GCGga--GGUGCc---GCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 1268 0.68 0.417047
Target:  5'- gCCGGUGCcuaaaccgccccggCCGCUUCCGgCGGCccacCGCc -3'
miRNA:   3'- -GGCCAUG--------------GGCGGAGGU-GCCGcuu-GCG- -5'
7269 3' -59.1 NC_001900.1 + 42021 0.68 0.418866
Target:  5'- cCCGG-ACUCGCucaacguCUCCACGGUcaagaaccggGGugGCa -3'
miRNA:   3'- -GGCCaUGGGCG-------GAGGUGCCG----------CUugCG- -5'
7269 3' -59.1 NC_001900.1 + 14520 0.68 0.419776
Target:  5'- gUCGGUGCCCGCgaagaacccggaCggggcguggCCGaacucaagGGCGAACGCg -3'
miRNA:   3'- -GGCCAUGGGCG------------Ga--------GGUg-------CCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 26111 0.68 0.42895
Target:  5'- gCaGUACCCGaCggCACGGCGGcACGCc -3'
miRNA:   3'- gGcCAUGGGCgGagGUGCCGCU-UGCG- -5'
7269 3' -59.1 NC_001900.1 + 28055 0.68 0.42895
Target:  5'- --cGUGCCCGCCggggGCGGCGucAACGUg -3'
miRNA:   3'- ggcCAUGGGCGGagg-UGCCGC--UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 7942 0.68 0.43824
Target:  5'- aCCGGUucaucaUCuaCUCCGCGGcCGGugGCc -3'
miRNA:   3'- -GGCCAug----GGcgGAGGUGCC-GCUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.