miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 3941 1.13 0.000238
Target:  5'- gCCGGUACCCGCCUCCACGGCGAACGCg -3'
miRNA:   3'- -GGCCAUGGGCGGAGGUGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 32355 0.82 0.044491
Target:  5'- -aGGUACUcguaCGCCUCCugGGCGAACGa -3'
miRNA:   3'- ggCCAUGG----GCGGAGGugCCGCUUGCg -5'
7269 3' -59.1 NC_001900.1 + 25748 0.75 0.153586
Target:  5'- gCCGGUGaccgugCCGCCUCacguCGCGGCGAugaucCGCg -3'
miRNA:   3'- -GGCCAUg-----GGCGGAG----GUGCCGCUu----GCG- -5'
7269 3' -59.1 NC_001900.1 + 12298 0.74 0.16193
Target:  5'- gUGGUACCCaucggcaCCUUCugGGCGAACuGCu -3'
miRNA:   3'- gGCCAUGGGc------GGAGGugCCGCUUG-CG- -5'
7269 3' -59.1 NC_001900.1 + 42956 0.74 0.166253
Target:  5'- uUGGUGugaCCGCCUCCGucgaGGgGGACGCg -3'
miRNA:   3'- gGCCAUg--GGCGGAGGUg---CCgCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 18856 0.74 0.184116
Target:  5'- gCCGGaAgCCGCCUUCACGaGCGGgucaucgcccgcuGCGCc -3'
miRNA:   3'- -GGCCaUgGGCGGAGGUGC-CGCU-------------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 7758 0.73 0.189453
Target:  5'- gCCGG-AUCaCGCCUUCGCGGUaGACGUa -3'
miRNA:   3'- -GGCCaUGG-GCGGAGGUGCCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 34981 0.72 0.22668
Target:  5'- aCGuGU-CCCGCgUCCggGCGGCGGGuCGCa -3'
miRNA:   3'- gGC-CAuGGGCGgAGG--UGCCGCUU-GCG- -5'
7269 3' -59.1 NC_001900.1 + 19185 0.72 0.232478
Target:  5'- cCCGGUGCUCGCUaCCugGGacacCGAguucugaaGCGCg -3'
miRNA:   3'- -GGCCAUGGGCGGaGGugCC----GCU--------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 3120 0.72 0.232478
Target:  5'- gCgGGUGCCCGCucgauCUCCA-GGCGGACcCg -3'
miRNA:   3'- -GgCCAUGGGCG-----GAGGUgCCGCUUGcG- -5'
7269 3' -59.1 NC_001900.1 + 16379 0.72 0.250623
Target:  5'- gUGGuUGCCCGCCUggaCUGCGucguagauguccGCGAGCGCg -3'
miRNA:   3'- gGCC-AUGGGCGGA---GGUGC------------CGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 25029 0.71 0.256927
Target:  5'- cCCGGUGCCCGUggCCA-GGCGugguuccuGGCGUa -3'
miRNA:   3'- -GGCCAUGGGCGgaGGUgCCGC--------UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 33883 0.71 0.263359
Target:  5'- gUGGUACCCGUCagCCGCGuacugGGACGCg -3'
miRNA:   3'- gGCCAUGGGCGGa-GGUGCcg---CUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 43823 0.71 0.269921
Target:  5'- aCCGGaACgCCGCUUCUggcgucgggaACGGCcAGCGCg -3'
miRNA:   3'- -GGCCaUG-GGCGGAGG----------UGCCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 38001 0.7 0.297489
Target:  5'- -aGGaaGCUcagCGCCucaUCCACGGUGAGCGCa -3'
miRNA:   3'- ggCCa-UGG---GCGG---AGGUGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 39052 0.7 0.297489
Target:  5'- gCCuGUGCCC-CUUCCACGG-GGACGa -3'
miRNA:   3'- -GGcCAUGGGcGGAGGUGCCgCUUGCg -5'
7269 3' -59.1 NC_001900.1 + 40851 0.7 0.312072
Target:  5'- aCCGGUcCCCguaugGCCUgguggugguUCACGGCG-GCGCu -3'
miRNA:   3'- -GGCCAuGGG-----CGGA---------GGUGCCGCuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 3575 0.7 0.312072
Target:  5'- uCCGGU-CUCGCUguUCCcCGcGUGGACGCu -3'
miRNA:   3'- -GGCCAuGGGCGG--AGGuGC-CGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 35717 0.7 0.317303
Target:  5'- uUGGUGCCCuucuucacgucgGCCUCCGCuggccguagccaggGGUGAacACGCc -3'
miRNA:   3'- gGCCAUGGG------------CGGAGGUG--------------CCGCU--UGCG- -5'
7269 3' -59.1 NC_001900.1 + 24504 0.7 0.319565
Target:  5'- cCCGGUGCUgaCuCCggUCACGGCGGucgGCGCg -3'
miRNA:   3'- -GGCCAUGG--GcGGa-GGUGCCGCU---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.