miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 1268 0.68 0.417047
Target:  5'- gCCGGUGCcuaaaccgccccggCCGCUUCCGgCGGCccacCGCc -3'
miRNA:   3'- -GGCCAUG--------------GGCGGAGGU-GCCGcuu-GCG- -5'
7269 3' -59.1 NC_001900.1 + 2743 0.69 0.384304
Target:  5'- aCGuGUGCCCacagucaCCUCCugGGUGGA-GCa -3'
miRNA:   3'- gGC-CAUGGGc------GGAGGugCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 3060 0.66 0.536794
Target:  5'- gCGGgcACCCGCCgacCCGacCGGCGGgaaggucguugACGUg -3'
miRNA:   3'- gGCCa-UGGGCGGa--GGU--GCCGCU-----------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 3120 0.72 0.232478
Target:  5'- gCgGGUGCCCGCucgauCUCCA-GGCGGACcCg -3'
miRNA:   3'- -GgCCAUGGGCG-----GAGGUgCCGCUUGcG- -5'
7269 3' -59.1 NC_001900.1 + 3575 0.7 0.312072
Target:  5'- uCCGGU-CUCGCUguUCCcCGcGUGGACGCu -3'
miRNA:   3'- -GGCCAuGGGCGG--AGGuGC-CGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 3614 0.66 0.506269
Target:  5'- gCCGuUACCgGCCccgagcgCCGCGuCGAugGCg -3'
miRNA:   3'- -GGCcAUGGgCGGa------GGUGCcGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 3941 1.13 0.000238
Target:  5'- gCCGGUACCCGCCUCCACGGCGAACGCg -3'
miRNA:   3'- -GGCCAUGGGCGGAGGUGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 4631 0.67 0.496257
Target:  5'- gCGGgauucgaACCCGCgauCUUCugGGUGAGgGCc -3'
miRNA:   3'- gGCCa------UGGGCG---GAGGugCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 4986 0.66 0.506269
Target:  5'- cCCGGcaUGCUCGUcgggCUCCagcacgGCGGCGGGgGCc -3'
miRNA:   3'- -GGCC--AUGGGCG----GAGG------UGCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 5840 0.66 0.536794
Target:  5'- gCGGUucAUCCGCgagaUCCACGG--GGCGCu -3'
miRNA:   3'- gGCCA--UGGGCGg---AGGUGCCgcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 6651 0.68 0.401791
Target:  5'- cUCGGgccugGCCUGCCUgCCgauACGGC--ACGCg -3'
miRNA:   3'- -GGCCa----UGGGCGGA-GG---UGCCGcuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 7758 0.73 0.189453
Target:  5'- gCCGG-AUCaCGCCUUCGCGGUaGACGUa -3'
miRNA:   3'- -GGCCaUGG-GCGGAGGUGCCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 7942 0.68 0.43824
Target:  5'- aCCGGUucaucaUCuaCUCCGCGGcCGGugGCc -3'
miRNA:   3'- -GGCCAug----GGcgGAGGUGCC-GCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 9788 0.66 0.547114
Target:  5'- cCCGGUGguCCCGCUUCCGaacCGGACccgGCu -3'
miRNA:   3'- -GGCCAU--GGGCGGAGGUgccGCUUG---CG- -5'
7269 3' -59.1 NC_001900.1 + 10428 0.67 0.496257
Target:  5'- gCGGcgUCaGCCUUCGCGGCGuACGUc -3'
miRNA:   3'- gGCCauGGgCGGAGGUGCCGCuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 11584 0.67 0.495261
Target:  5'- gCGGUGucggacauguguuUUCGCCUCCugGGC-AugGUu -3'
miRNA:   3'- gGCCAU-------------GGGCGGAGGugCCGcUugCG- -5'
7269 3' -59.1 NC_001900.1 + 12298 0.74 0.16193
Target:  5'- gUGGUACCCaucggcaCCUUCugGGCGAACuGCu -3'
miRNA:   3'- gGCCAUGGGc------GGAGGugCCGCUUG-CG- -5'
7269 3' -59.1 NC_001900.1 + 12442 0.66 0.526543
Target:  5'- -aGGUGgcgaCCGCCUUCGCgauGGCGuucgacGGCGCg -3'
miRNA:   3'- ggCCAUg---GGCGGAGGUG---CCGC------UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 12545 0.68 0.410723
Target:  5'- gUCGGUGCCgUGCaucgCCGCGccguCGAACGCc -3'
miRNA:   3'- -GGCCAUGG-GCGga--GGUGCc---GCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 12688 0.69 0.376601
Target:  5'- aCGGUcGCCCGCUguucaucgagucgacCUACGGUGAGgcCGCg -3'
miRNA:   3'- gGCCA-UGGGCGGa--------------GGUGCCGCUU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.