miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 3941 1.13 0.000238
Target:  5'- gCCGGUACCCGCCUCCACGGCGAACGCg -3'
miRNA:   3'- -GGCCAUGGGCGGAGGUGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 31419 0.67 0.447645
Target:  5'- aUCGGUAgC-GCCUCaucaCGCGGC-AGCGCg -3'
miRNA:   3'- -GGCCAUgGgCGGAG----GUGCCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 39546 0.67 0.47651
Target:  5'- cCCGGUACCCcggaguCCUCUucGCGGCucuccccauCGCu -3'
miRNA:   3'- -GGCCAUGGGc-----GGAGG--UGCCGcuu------GCG- -5'
7269 3' -59.1 NC_001900.1 + 48141 0.66 0.547114
Target:  5'- aUCGGacuUCCGCCUCacccGCGAAUGCu -3'
miRNA:   3'- -GGCCau-GGGCGGAGgugcCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 25029 0.71 0.256927
Target:  5'- cCCGGUGCCCGUggCCA-GGCGugguuccuGGCGUa -3'
miRNA:   3'- -GGCCAUGGGCGgaGGUgCCGC--------UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 33883 0.71 0.263359
Target:  5'- gUGGUACCCGUCagCCGCGuacugGGACGCg -3'
miRNA:   3'- gGCCAUGGGCGGa-GGUGCcg---CUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 3575 0.7 0.312072
Target:  5'- uCCGGU-CUCGCUguUCCcCGcGUGGACGCu -3'
miRNA:   3'- -GGCCAuGGGCGG--AGGuGC-CGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 35717 0.7 0.317303
Target:  5'- uUGGUGCCCuucuucacgucgGCCUCCGCuggccguagccaggGGUGAacACGCc -3'
miRNA:   3'- gGCCAUGGG------------CGGAGGUG--------------CCGCU--UGCG- -5'
7269 3' -59.1 NC_001900.1 + 45258 0.7 0.334953
Target:  5'- gUGGgcUCCGCUggCUACGGaGAACGCa -3'
miRNA:   3'- gGCCauGGGCGGa-GGUGCCgCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 7942 0.68 0.43824
Target:  5'- aCCGGUucaucaUCuaCUCCGCGGcCGGugGCc -3'
miRNA:   3'- -GGCCAug----GGcgGAGGUGCC-GCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 12688 0.69 0.376601
Target:  5'- aCGGUcGCCCGCUguucaucgagucgacCUACGGUGAGgcCGCg -3'
miRNA:   3'- gGCCA-UGGGCGGa--------------GGUGCCGCUU--GCG- -5'
7269 3' -59.1 NC_001900.1 + 29900 0.7 0.327192
Target:  5'- uCCGGUcGCCCGagagCGCGGCcaGGACGCg -3'
miRNA:   3'- -GGCCA-UGGGCggagGUGCCG--CUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 32355 0.82 0.044491
Target:  5'- -aGGUACUcguaCGCCUCCugGGCGAACGa -3'
miRNA:   3'- ggCCAUGG----GCGGAGGugCCGCUUGCg -5'
7269 3' -59.1 NC_001900.1 + 6651 0.68 0.401791
Target:  5'- cUCGGgccugGCCUGCCUgCCgauACGGC--ACGCg -3'
miRNA:   3'- -GGCCa----UGGGCGGA-GG---UGCCGcuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 42956 0.74 0.166253
Target:  5'- uUGGUGugaCCGCCUCCGucgaGGgGGACGCg -3'
miRNA:   3'- gGCCAUg--GGCGGAGGUg---CCgCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 24504 0.7 0.319565
Target:  5'- cCCGGUGCUgaCuCCggUCACGGCGGucgGCGCg -3'
miRNA:   3'- -GGCCAUGG--GcGGa-GGUGCCGCU---UGCG- -5'
7269 3' -59.1 NC_001900.1 + 34703 0.68 0.410723
Target:  5'- aCCGGcgaACaCCGCCUgCCACcacacacuGcGCGAugGCg -3'
miRNA:   3'- -GGCCa--UG-GGCGGA-GGUG--------C-CGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 43787 0.67 0.447645
Target:  5'- cCCGGUcgGgCCGCUcCuCGCuGUGAGCGCg -3'
miRNA:   3'- -GGCCA--UgGGCGGaG-GUGcCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 19185 0.72 0.232478
Target:  5'- cCCGGUGCUCGCUaCCugGGacacCGAguucugaaGCGCg -3'
miRNA:   3'- -GGCCAUGGGCGGaGGugCC----GCU--------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 43823 0.71 0.269921
Target:  5'- aCCGGaACgCCGCUUCUggcgucgggaACGGCcAGCGCg -3'
miRNA:   3'- -GGCCaUG-GGCGGAGG----------UGCCGcUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.