Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7270 | 5' | -55.3 | NC_001900.1 | + | 38539 | 0.66 | 0.703461 |
Target: 5'- -aCCGcuGA-GCUGuGCGGGAUCCCGAc -3' miRNA: 3'- caGGCuuCUcCGGC-UGUUCUAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 1657 | 0.66 | 0.703461 |
Target: 5'- --aCGAGGAGGCgugguuCGGCAAGGgccacgUCCCGc -3' miRNA: 3'- cagGCUUCUCCG------GCUGUUCU------AGGGCu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 34907 | 0.66 | 0.681646 |
Target: 5'- --gCGAAGAuGCUGAcCGAGGUCuCCGAg -3' miRNA: 3'- cagGCUUCUcCGGCU-GUUCUAG-GGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 31152 | 0.66 | 0.681646 |
Target: 5'- cGUUCGAccGAGGCCGACGAauGAaCgCGAg -3' miRNA: 3'- -CAGGCUu-CUCCGGCUGUU--CUaGgGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 16974 | 0.66 | 0.680549 |
Target: 5'- -gCCGAcaAGcGGCgCGGCGAuggcgacGAUCCCGAc -3' miRNA: 3'- caGGCU--UCuCCG-GCUGUU-------CUAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 39887 | 0.66 | 0.670661 |
Target: 5'- uUCCGuacGAGGCCGGCcugagcacggccAAGAUCaCCa- -3' miRNA: 3'- cAGGCuu-CUCCGGCUG------------UUCUAG-GGcu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 42406 | 0.66 | 0.670661 |
Target: 5'- -aUCGAGGAGucgauuGCCaacgaccucGAUGAGAUCCCGAu -3' miRNA: 3'- caGGCUUCUC------CGG---------CUGUUCUAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 36858 | 0.66 | 0.670661 |
Target: 5'- uUCCGAucgucGGAGGCCGAU----UCUCGGu -3' miRNA: 3'- cAGGCU-----UCUCCGGCUGuucuAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 47675 | 0.66 | 0.65964 |
Target: 5'- cUCCGAAGGuucgccacccccGGCCGACGAaacgucgcuGggCCUGAg -3' miRNA: 3'- cAGGCUUCU------------CCGGCUGUU---------CuaGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 14365 | 0.67 | 0.637531 |
Target: 5'- -aUCGAAGAGGUCGACGGcGAUgUgGAc -3' miRNA: 3'- caGGCUUCUCCGGCUGUU-CUAgGgCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 28271 | 0.67 | 0.593331 |
Target: 5'- gGUCCG-GGAGGgcuCCGugGAGA-CCCGc -3' miRNA: 3'- -CAGGCuUCUCC---GGCugUUCUaGGGCu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 33281 | 0.68 | 0.582341 |
Target: 5'- cGUCaCGGAGGcucuGGUCGACcugggcguuGAUCCCGAc -3' miRNA: 3'- -CAG-GCUUCU----CCGGCUGuu-------CUAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 8262 | 0.68 | 0.582341 |
Target: 5'- cUCuCGAAGcgccGGCCGACAccccgaucuccgAGAUCCCu- -3' miRNA: 3'- cAG-GCUUCu---CCGGCUGU------------UCUAGGGcu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 11541 | 0.68 | 0.53888 |
Target: 5'- -aCCGAAGGcacuccGGCCGGCGAcccGAcCCCGGu -3' miRNA: 3'- caGGCUUCU------CCGGCUGUU---CUaGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 34300 | 0.69 | 0.528179 |
Target: 5'- aUCCGAAGA-GCCGA-GAGGUUCUGGa -3' miRNA: 3'- cAGGCUUCUcCGGCUgUUCUAGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 11866 | 0.69 | 0.528179 |
Target: 5'- --gCGAGGAcGCCGACucGAUCgCCGAg -3' miRNA: 3'- cagGCUUCUcCGGCUGuuCUAG-GGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 10026 | 0.69 | 0.496579 |
Target: 5'- cGUUCGAGGAcGCCGaagGCAAGAUCCa-- -3' miRNA: 3'- -CAGGCUUCUcCGGC---UGUUCUAGGgcu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 37376 | 0.69 | 0.475993 |
Target: 5'- aUUCGGAGcAGGCCaaGACGAGGUUCCu- -3' miRNA: 3'- cAGGCUUC-UCCGG--CUGUUCUAGGGcu -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 12185 | 0.7 | 0.46586 |
Target: 5'- cUUCGccGAGGCCGAgAAGAcCUCGAu -3' miRNA: 3'- cAGGCuuCUCCGGCUgUUCUaGGGCU- -5' |
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7270 | 5' | -55.3 | NC_001900.1 | + | 31543 | 0.7 | 0.454845 |
Target: 5'- cGUCCGggGGaucuaccacugauGGCCGAUcGGAUCCaGGu -3' miRNA: 3'- -CAGGCuuCU-------------CCGGCUGuUCUAGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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