miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7270 5' -55.3 NC_001900.1 + 38539 0.66 0.703461
Target:  5'- -aCCGcuGA-GCUGuGCGGGAUCCCGAc -3'
miRNA:   3'- caGGCuuCUcCGGC-UGUUCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 1657 0.66 0.703461
Target:  5'- --aCGAGGAGGCgugguuCGGCAAGGgccacgUCCCGc -3'
miRNA:   3'- cagGCUUCUCCG------GCUGUUCU------AGGGCu -5'
7270 5' -55.3 NC_001900.1 + 34907 0.66 0.681646
Target:  5'- --gCGAAGAuGCUGAcCGAGGUCuCCGAg -3'
miRNA:   3'- cagGCUUCUcCGGCU-GUUCUAG-GGCU- -5'
7270 5' -55.3 NC_001900.1 + 31152 0.66 0.681646
Target:  5'- cGUUCGAccGAGGCCGACGAauGAaCgCGAg -3'
miRNA:   3'- -CAGGCUu-CUCCGGCUGUU--CUaGgGCU- -5'
7270 5' -55.3 NC_001900.1 + 16974 0.66 0.680549
Target:  5'- -gCCGAcaAGcGGCgCGGCGAuggcgacGAUCCCGAc -3'
miRNA:   3'- caGGCU--UCuCCG-GCUGUU-------CUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 42406 0.66 0.670661
Target:  5'- -aUCGAGGAGucgauuGCCaacgaccucGAUGAGAUCCCGAu -3'
miRNA:   3'- caGGCUUCUC------CGG---------CUGUUCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 36858 0.66 0.670661
Target:  5'- uUCCGAucgucGGAGGCCGAU----UCUCGGu -3'
miRNA:   3'- cAGGCU-----UCUCCGGCUGuucuAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 39887 0.66 0.670661
Target:  5'- uUCCGuacGAGGCCGGCcugagcacggccAAGAUCaCCa- -3'
miRNA:   3'- cAGGCuu-CUCCGGCUG------------UUCUAG-GGcu -5'
7270 5' -55.3 NC_001900.1 + 47675 0.66 0.65964
Target:  5'- cUCCGAAGGuucgccacccccGGCCGACGAaacgucgcuGggCCUGAg -3'
miRNA:   3'- cAGGCUUCU------------CCGGCUGUU---------CuaGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 14365 0.67 0.637531
Target:  5'- -aUCGAAGAGGUCGACGGcGAUgUgGAc -3'
miRNA:   3'- caGGCUUCUCCGGCUGUU-CUAgGgCU- -5'
7270 5' -55.3 NC_001900.1 + 28271 0.67 0.593331
Target:  5'- gGUCCG-GGAGGgcuCCGugGAGA-CCCGc -3'
miRNA:   3'- -CAGGCuUCUCC---GGCugUUCUaGGGCu -5'
7270 5' -55.3 NC_001900.1 + 8262 0.68 0.582341
Target:  5'- cUCuCGAAGcgccGGCCGACAccccgaucuccgAGAUCCCu- -3'
miRNA:   3'- cAG-GCUUCu---CCGGCUGU------------UCUAGGGcu -5'
7270 5' -55.3 NC_001900.1 + 33281 0.68 0.582341
Target:  5'- cGUCaCGGAGGcucuGGUCGACcugggcguuGAUCCCGAc -3'
miRNA:   3'- -CAG-GCUUCU----CCGGCUGuu-------CUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 11541 0.68 0.53888
Target:  5'- -aCCGAAGGcacuccGGCCGGCGAcccGAcCCCGGu -3'
miRNA:   3'- caGGCUUCU------CCGGCUGUU---CUaGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 11866 0.69 0.528179
Target:  5'- --gCGAGGAcGCCGACucGAUCgCCGAg -3'
miRNA:   3'- cagGCUUCUcCGGCUGuuCUAG-GGCU- -5'
7270 5' -55.3 NC_001900.1 + 34300 0.69 0.528179
Target:  5'- aUCCGAAGA-GCCGA-GAGGUUCUGGa -3'
miRNA:   3'- cAGGCUUCUcCGGCUgUUCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 10026 0.69 0.496579
Target:  5'- cGUUCGAGGAcGCCGaagGCAAGAUCCa-- -3'
miRNA:   3'- -CAGGCUUCUcCGGC---UGUUCUAGGgcu -5'
7270 5' -55.3 NC_001900.1 + 37376 0.69 0.475993
Target:  5'- aUUCGGAGcAGGCCaaGACGAGGUUCCu- -3'
miRNA:   3'- cAGGCUUC-UCCGG--CUGUUCUAGGGcu -5'
7270 5' -55.3 NC_001900.1 + 12185 0.7 0.46586
Target:  5'- cUUCGccGAGGCCGAgAAGAcCUCGAu -3'
miRNA:   3'- cAGGCuuCUCCGGCUgUUCUaGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 31543 0.7 0.454845
Target:  5'- cGUCCGggGGaucuaccacugauGGCCGAUcGGAUCCaGGu -3'
miRNA:   3'- -CAGGCuuCU-------------CCGGCUGuUCUAGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.