Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7271 | 5' | -57.6 | NC_001900.1 | + | 5322 | 1.06 | 0.000781 |
Target: 5'- aUCCAGGCCGACUGCACCAACCCGAAUc -3' miRNA: 3'- -AGGUCCGGCUGACGUGGUUGGGCUUA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 44485 | 0.79 | 0.078926 |
Target: 5'- cUCCAGGCCGACggUGUACCGgcGCUCGAu- -3' miRNA: 3'- -AGGUCCGGCUG--ACGUGGU--UGGGCUua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 34486 | 0.78 | 0.091118 |
Target: 5'- aCgAGGUCGuCUGCACCAACCCGuGUg -3' miRNA: 3'- aGgUCCGGCuGACGUGGUUGGGCuUA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 29431 | 0.75 | 0.135406 |
Target: 5'- gUCCGGuGCUGAUcgGCACCGAcCCCGAAg -3' miRNA: 3'- -AGGUC-CGGCUGa-CGUGGUU-GGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 16009 | 0.73 | 0.182795 |
Target: 5'- aUCCGGGCCGAgCUGUacgcgaccguacuGCgGACCUGGAUg -3' miRNA: 3'- -AGGUCCGGCU-GACG-------------UGgUUGGGCUUA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 22861 | 0.72 | 0.215309 |
Target: 5'- uUCCAGGUguuccuccagCGGCUGCugACCgAACCCGGAg -3' miRNA: 3'- -AGGUCCG----------GCUGACG--UGG-UUGGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 42774 | 0.72 | 0.221091 |
Target: 5'- aCCAGGUCGuGCcagGCGuCCAGCCCGAc- -3' miRNA: 3'- aGGUCCGGC-UGa--CGU-GGUUGGGCUua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 23398 | 0.72 | 0.221091 |
Target: 5'- aUCAGGCCGAgUGgACCGACCagGGAg -3' miRNA: 3'- aGGUCCGGCUgACgUGGUUGGg-CUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 41615 | 0.72 | 0.239231 |
Target: 5'- gUCGGGCuCGAUggaGCACCGACCCuGGAUc -3' miRNA: 3'- aGGUCCG-GCUGa--CGUGGUUGGG-CUUA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 4903 | 0.71 | 0.252004 |
Target: 5'- aCCAGGCUGccguCUGCagaACCAgACCCGAGc -3' miRNA: 3'- aGGUCCGGCu---GACG---UGGU-UGGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 6368 | 0.71 | 0.279228 |
Target: 5'- aCCAGGuuGAgaGCGCCAGCgaCGAu- -3' miRNA: 3'- aGGUCCggCUgaCGUGGUUGg-GCUua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 38440 | 0.7 | 0.316483 |
Target: 5'- aUCCuGGCUGACgGCgACgAGCCCGGu- -3' miRNA: 3'- -AGGuCCGGCUGaCG-UGgUUGGGCUua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 13442 | 0.7 | 0.324369 |
Target: 5'- aUCgAGGCCGACgcggUGCugCGucuggugcguaACCCGGAg -3' miRNA: 3'- -AGgUCCGGCUG----ACGugGU-----------UGGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 30113 | 0.69 | 0.335654 |
Target: 5'- gUCCAGGaacgucuggacccaCGACgUGCGCCAcuuCCCGAGc -3' miRNA: 3'- -AGGUCCg-------------GCUG-ACGUGGUu--GGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 43181 | 0.69 | 0.357363 |
Target: 5'- cUCUGGGCUGGCUGCugaACCGGCCaGGc- -3' miRNA: 3'- -AGGUCCGGCUGACG---UGGUUGGgCUua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 33187 | 0.68 | 0.383612 |
Target: 5'- aCCAagauGGCCGAUcacuCGCCAACCUGggUg -3' miRNA: 3'- aGGU----CCGGCUGac--GUGGUUGGGCuuA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 54 | 0.68 | 0.420543 |
Target: 5'- -aCGGGCCGACgcuagaGCGCCucGCCCa--- -3' miRNA: 3'- agGUCCGGCUGa-----CGUGGu-UGGGcuua -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 41966 | 0.68 | 0.430106 |
Target: 5'- gUCCGGGCCGAa-GCcguCCGACUCGcGAUg -3' miRNA: 3'- -AGGUCCGGCUgaCGu--GGUUGGGC-UUA- -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 25454 | 0.68 | 0.430106 |
Target: 5'- cUCCuuGGUCGuC-GCACCGGCCUGAGc -3' miRNA: 3'- -AGGu-CCGGCuGaCGUGGUUGGGCUUa -5' |
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7271 | 5' | -57.6 | NC_001900.1 | + | 10513 | 0.67 | 0.439796 |
Target: 5'- gCUGGGCaCGAUggucGaCGCCGACCCGAc- -3' miRNA: 3'- aGGUCCG-GCUGa---C-GUGGUUGGGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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