miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7271 5' -57.6 NC_001900.1 + 54 0.68 0.420543
Target:  5'- -aCGGGCCGACgcuagaGCGCCucGCCCa--- -3'
miRNA:   3'- agGUCCGGCUGa-----CGUGGu-UGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 3619 0.67 0.479749
Target:  5'- aCCAGGCCGu---UACCGGcCCCGAGc -3'
miRNA:   3'- aGGUCCGGCugacGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 4903 0.71 0.252004
Target:  5'- aCCAGGCUGccguCUGCagaACCAgACCCGAGc -3'
miRNA:   3'- aGGUCCGGCu---GACG---UGGU-UGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 5322 1.06 0.000781
Target:  5'- aUCCAGGCCGACUGCACCAACCCGAAUc -3'
miRNA:   3'- -AGGUCCGGCUGACGUGGUUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 6314 0.67 0.439796
Target:  5'- aCCuGGUCGGCgcagccGCACCGGCCaCGGc- -3'
miRNA:   3'- aGGuCCGGCUGa-----CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 6368 0.71 0.279228
Target:  5'- aCCAGGuuGAgaGCGCCAGCgaCGAu- -3'
miRNA:   3'- aGGUCCggCUgaCGUGGUUGg-GCUua -5'
7271 5' -57.6 NC_001900.1 + 9697 0.67 0.449609
Target:  5'- gCCuuGGCCGGCcG-ACCGAUCCGAGg -3'
miRNA:   3'- aGGu-CCGGCUGaCgUGGUUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 10513 0.67 0.439796
Target:  5'- gCUGGGCaCGAUggucGaCGCCGACCCGAc- -3'
miRNA:   3'- aGGUCCG-GCUGa---C-GUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 13442 0.7 0.324369
Target:  5'- aUCgAGGCCGACgcggUGCugCGucuggugcguaACCCGGAg -3'
miRNA:   3'- -AGgUCCGGCUG----ACGugGU-----------UGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 16009 0.73 0.182795
Target:  5'- aUCCGGGCCGAgCUGUacgcgaccguacuGCgGACCUGGAUg -3'
miRNA:   3'- -AGGUCCGGCU-GACG-------------UGgUUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 17058 0.66 0.510843
Target:  5'- gUCCAuGCCGAgUGCGaccacaccggcuCCAGCgCCGAAc -3'
miRNA:   3'- -AGGUcCGGCUgACGU------------GGUUG-GGCUUa -5'
7271 5' -57.6 NC_001900.1 + 21232 0.66 0.542745
Target:  5'- cCCGGaGCgGACUGUccACCGGCCagGAAg -3'
miRNA:   3'- aGGUC-CGgCUGACG--UGGUUGGg-CUUa -5'
7271 5' -57.6 NC_001900.1 + 22861 0.72 0.215309
Target:  5'- uUCCAGGUguuccuccagCGGCUGCugACCgAACCCGGAg -3'
miRNA:   3'- -AGGUCCG----------GCUGACG--UGG-UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 23398 0.72 0.221091
Target:  5'- aUCAGGCCGAgUGgACCGACCagGGAg -3'
miRNA:   3'- aGGUCCGGCUgACgUGGUUGGg-CUUa -5'
7271 5' -57.6 NC_001900.1 + 23888 0.66 0.542745
Target:  5'- gCCAGcGCCGAUa--GCCGACCgGAGc -3'
miRNA:   3'- aGGUC-CGGCUGacgUGGUUGGgCUUa -5'
7271 5' -57.6 NC_001900.1 + 24020 0.67 0.46959
Target:  5'- aCCAgcgcGGCCGAagcccGCGCCAACCuCGGu- -3'
miRNA:   3'- aGGU----CCGGCUga---CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 24801 0.67 0.490014
Target:  5'- aCCAGGCC--CUGCgguaccACCAGCgCCGAu- -3'
miRNA:   3'- aGGUCCGGcuGACG------UGGUUG-GGCUua -5'
7271 5' -57.6 NC_001900.1 + 25454 0.68 0.430106
Target:  5'- cUCCuuGGUCGuC-GCACCGGCCUGAGc -3'
miRNA:   3'- -AGGu-CCGGCuGaCGUGGUUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 27861 0.66 0.532031
Target:  5'- gUCCuuGacgaCGACUGCACCAACCUu--- -3'
miRNA:   3'- -AGGucCg---GCUGACGUGGUUGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 29431 0.75 0.135406
Target:  5'- gUCCGGuGCUGAUcgGCACCGAcCCCGAAg -3'
miRNA:   3'- -AGGUC-CGGCUGa-CGUGGUU-GGGCUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.