miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7271 5' -57.6 NC_001900.1 + 42774 0.72 0.221091
Target:  5'- aCCAGGUCGuGCcagGCGuCCAGCCCGAc- -3'
miRNA:   3'- aGGUCCGGC-UGa--CGU-GGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 48478 0.67 0.490014
Target:  5'- aCCAcGGCCGGgUaGCugUcaAGCCCGAAUu -3'
miRNA:   3'- aGGU-CCGGCUgA-CGugG--UUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 30698 0.66 0.521396
Target:  5'- cUCCAgcgaguGGCCGAaccCACCGGcCCCGAAa -3'
miRNA:   3'- -AGGU------CCGGCUgacGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 38730 0.66 0.532031
Target:  5'- cCCAGGCCGAacgGUagaACCugaugAACCUGAAg -3'
miRNA:   3'- aGGUCCGGCUga-CG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 30113 0.69 0.335654
Target:  5'- gUCCAGGaacgucuggacccaCGACgUGCGCCAcuuCCCGAGc -3'
miRNA:   3'- -AGGUCCg-------------GCUG-ACGUGGUu--GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 54 0.68 0.420543
Target:  5'- -aCGGGCCGACgcuagaGCGCCucGCCCa--- -3'
miRNA:   3'- agGUCCGGCUGa-----CGUGGu-UGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 5322 1.06 0.000781
Target:  5'- aUCCAGGCCGACUGCACCAACCCGAAUc -3'
miRNA:   3'- -AGGUCCGGCUGACGUGGUUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 44485 0.79 0.078926
Target:  5'- cUCCAGGCCGACggUGUACCGgcGCUCGAu- -3'
miRNA:   3'- -AGGUCCGGCUG--ACGUGGU--UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 16009 0.73 0.182795
Target:  5'- aUCCGGGCCGAgCUGUacgcgaccguacuGCgGACCUGGAUg -3'
miRNA:   3'- -AGGUCCGGCU-GACG-------------UGgUUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 24020 0.67 0.46959
Target:  5'- aCCAgcgcGGCCGAagcccGCGCCAACCuCGGu- -3'
miRNA:   3'- aGGU----CCGGCUga---CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 37423 0.67 0.439796
Target:  5'- gUCGGGCUGGgUGuCGCCGaugaACCCGAc- -3'
miRNA:   3'- aGGUCCGGCUgAC-GUGGU----UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 10513 0.67 0.439796
Target:  5'- gCUGGGCaCGAUggucGaCGCCGACCCGAc- -3'
miRNA:   3'- aGGUCCG-GCUGa---C-GUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 23398 0.72 0.221091
Target:  5'- aUCAGGCCGAgUGgACCGACCagGGAg -3'
miRNA:   3'- aGGUCCGGCUgACgUGGUUGGg-CUUa -5'
7271 5' -57.6 NC_001900.1 + 6314 0.67 0.439796
Target:  5'- aCCuGGUCGGCgcagccGCACCGGCCaCGGc- -3'
miRNA:   3'- aGGuCCGGCUGa-----CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 41615 0.72 0.239231
Target:  5'- gUCGGGCuCGAUggaGCACCGACCCuGGAUc -3'
miRNA:   3'- aGGUCCG-GCUGa--CGUGGUUGGG-CUUA- -5'
7271 5' -57.6 NC_001900.1 + 25454 0.68 0.430106
Target:  5'- cUCCuuGGUCGuC-GCACCGGCCUGAGc -3'
miRNA:   3'- -AGGu-CCGGCuGaCGUGGUUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 44709 0.67 0.459542
Target:  5'- gCCAGGCCGcuggccGCUGCcacACCuugucGAUCCGAGc -3'
miRNA:   3'- aGGUCCGGC------UGACG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 34989 0.66 0.521396
Target:  5'- aCCaAGG-CGGCUGC-CCAGCCCu--- -3'
miRNA:   3'- aGG-UCCgGCUGACGuGGUUGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 13442 0.7 0.324369
Target:  5'- aUCgAGGCCGACgcggUGCugCGucuggugcguaACCCGGAg -3'
miRNA:   3'- -AGgUCCGGCUG----ACGugGU-----------UGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 41966 0.68 0.430106
Target:  5'- gUCCGGGCCGAa-GCcguCCGACUCGcGAUg -3'
miRNA:   3'- -AGGUCCGGCUgaCGu--GGUUGGGC-UUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.