miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 3' -58.1 NC_001900.1 + 24937 0.72 0.242967
Target:  5'- aGGCaGCUCaccccagugguaUCGgguacgcACCUGGUggcggCGGCGCAGCc -3'
miRNA:   3'- -CCG-CGAG------------AGU-------UGGACCA-----GCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 27602 0.66 0.548393
Target:  5'- cGCGCUCgaucccggaugcagCGAUCaGGUUcgagcaGGCGUAGCa -3'
miRNA:   3'- cCGCGAGa-------------GUUGGaCCAG------CCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 28659 0.66 0.559036
Target:  5'- cGGUGUUgCUC-ACCUGGaaggugaugcccuccUCGGCgauguaccaggGCAGCu -3'
miRNA:   3'- -CCGCGA-GAGuUGGACC---------------AGCCG-----------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 29343 0.66 0.554771
Target:  5'- -aCGCUUUcCAACUucggGGUCGGUGCcgaucAGCa -3'
miRNA:   3'- ccGCGAGA-GUUGGa---CCAGCCGCG-----UCG- -5'
7275 3' -58.1 NC_001900.1 + 33180 0.69 0.378293
Target:  5'- uGGCcgaucaCUCgcCAACCUGGgUGGCgGCAGCa -3'
miRNA:   3'- -CCGc-----GAGa-GUUGGACCaGCCG-CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 35074 0.69 0.387095
Target:  5'- -cCGC-CUCGGCCaGGUCaGCGUAGUc -3'
miRNA:   3'- ccGCGaGAGUUGGaCCAGcCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 35820 0.66 0.523124
Target:  5'- cGGCGUgUUCAccCCUGGcuaCGGC-CAGCg -3'
miRNA:   3'- -CCGCGaGAGUu-GGACCa--GCCGcGUCG- -5'
7275 3' -58.1 NC_001900.1 + 37167 0.68 0.423622
Target:  5'- --gGUUCUCGAacuugaaCUGGUCGGCGUacucgaccagAGCu -3'
miRNA:   3'- ccgCGAGAGUUg------GACCAGCCGCG----------UCG- -5'
7275 3' -58.1 NC_001900.1 + 38713 0.68 0.396032
Target:  5'- cGGUGgUCgcccuggCGuaaCUGGUCGGuUGCAGCg -3'
miRNA:   3'- -CCGCgAGa------GUug-GACCAGCC-GCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 39118 0.66 0.502415
Target:  5'- cGGCGCUaugcgCUCcccgauGACCUGGaCGGCcgGgGGCu -3'
miRNA:   3'- -CCGCGA-----GAG------UUGGACCaGCCG--CgUCG- -5'
7275 3' -58.1 NC_001900.1 + 43096 0.7 0.297881
Target:  5'- -cCGCUUgCGGCCUGGcCGGUucaGCAGCc -3'
miRNA:   3'- ccGCGAGaGUUGGACCaGCCG---CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 44799 0.68 0.414297
Target:  5'- aGCGCagcggaagCUUGAUCUGcGUcaCGGCGCGGCc -3'
miRNA:   3'- cCGCGa-------GAGUUGGAC-CA--GCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 45000 0.69 0.361096
Target:  5'- cGUGCgagCacgUCAACCUGGUCGGCcuuCAGa -3'
miRNA:   3'- cCGCGa--G---AGUUGGACCAGCCGc--GUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.