Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7279 | 3' | -51.1 | NC_001900.1 | + | 40422 | 0.67 | 0.877578 |
Target: 5'- cGCCGAGcACGGguuccgagucaucgcACUCGAcgcgGcCAACCa -3' miRNA: 3'- cUGGCUCaUGCC---------------UGAGCUa---CaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 16694 | 0.67 | 0.882261 |
Target: 5'- aGACCGAGgcugcccgaGGugUCaacauccccgucGAUGUCAACg -3' miRNA: 3'- -CUGGCUCaug------CCugAG------------CUACAGUUGg -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 29950 | 0.67 | 0.882261 |
Target: 5'- cGAUCGAGgccaugACGuGAC-CGggGUCAGCg -3' miRNA: 3'- -CUGGCUCa-----UGC-CUGaGCuaCAGUUGg -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 1262 | 0.66 | 0.889851 |
Target: 5'- aGCUGGcgGCGGGUUCGGUGguUCGACCg -3' miRNA: 3'- cUGGCUcaUGCCUGAGCUAC--AGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 34963 | 0.66 | 0.889851 |
Target: 5'- -cCCGguAGUG-GGugUCGAUcagGUCGACCa -3' miRNA: 3'- cuGGC--UCAUgCCugAGCUA---CAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 8920 | 0.66 | 0.889851 |
Target: 5'- cACCGGGUuguuCGGGCU-GgcGUUGACCu -3' miRNA: 3'- cUGGCUCAu---GCCUGAgCuaCAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 23514 | 0.66 | 0.897165 |
Target: 5'- cGGCCGGGUccguACGGACgaaccgugCGGUGUUcuguguGGCUc -3' miRNA: 3'- -CUGGCUCA----UGCCUGa-------GCUACAG------UUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 23805 | 0.66 | 0.904199 |
Target: 5'- -uCCGAcgACGGGCUCcg-GUCGGCUa -3' miRNA: 3'- cuGGCUcaUGCCUGAGcuaCAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 27469 | 0.66 | 0.904199 |
Target: 5'- gGGCCGAGccgcACGGcCUUGA-GcCGGCCg -3' miRNA: 3'- -CUGGCUCa---UGCCuGAGCUaCaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 28032 | 0.66 | 0.904199 |
Target: 5'- aACCGGGUGCGGAgcCGccaccGUCAcagGCCg -3' miRNA: 3'- cUGGCUCAUGCCUgaGCua---CAGU---UGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 12571 | 0.66 | 0.910949 |
Target: 5'- uGACCGAuGUaggucgggaACGGGCugUCGGUGcCGugCa -3' miRNA: 3'- -CUGGCU-CA---------UGCCUG--AGCUACaGUugG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 10595 | 0.66 | 0.910949 |
Target: 5'- gGACCGu---CGGG-UCGgcGUCGACCa -3' miRNA: 3'- -CUGGCucauGCCUgAGCuaCAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 20845 | 0.66 | 0.917411 |
Target: 5'- gGugCGGGUcGCGGucCUUGAUGU--ACCg -3' miRNA: 3'- -CugGCUCA-UGCCu-GAGCUACAguUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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