Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7279 | 3' | -51.1 | NC_001900.1 | + | 20845 | 0.66 | 0.917411 |
Target: 5'- gGugCGGGUcGCGGucCUUGAUGU--ACCg -3' miRNA: 3'- -CugGCUCA-UGCCu-GAGCUACAguUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 13507 | 0.75 | 0.416115 |
Target: 5'- cACCGcGU-CGGcCUCGAUGUCGAUCa -3' miRNA: 3'- cUGGCuCAuGCCuGAGCUACAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 30390 | 0.73 | 0.562484 |
Target: 5'- --aCGAGUACGGGaUCGAgaagGUCAACg -3' miRNA: 3'- cugGCUCAUGCCUgAGCUa---CAGUUGg -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 20980 | 0.72 | 0.573606 |
Target: 5'- cGCCGAagGCGGuCUCGGUGcccCAGCCa -3' miRNA: 3'- cUGGCUcaUGCCuGAGCUACa--GUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 33838 | 0.7 | 0.740857 |
Target: 5'- cGGCCGAGacgccgaGGACaUCGuggaGUCAGCCa -3' miRNA: 3'- -CUGGCUCaug----CCUG-AGCua--CAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 3300 | 0.67 | 0.849272 |
Target: 5'- uGCCGAGgucggccaUGCGGAUccuuucaaguUCGGaggGUCAACCc -3' miRNA: 3'- cUGGCUC--------AUGCCUG----------AGCUa--CAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 4330 | 0.67 | 0.849272 |
Target: 5'- --aCGAGgaaGGACUCGAaccuUCAACCg -3' miRNA: 3'- cugGCUCaugCCUGAGCUac--AGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 14039 | 0.67 | 0.866279 |
Target: 5'- uGCCGAcGUAcCGGACUgGuUGgCGACCu -3' miRNA: 3'- cUGGCU-CAU-GCCUGAgCuACaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 40422 | 0.67 | 0.877578 |
Target: 5'- cGCCGAGcACGGguuccgagucaucgcACUCGAcgcgGcCAACCa -3' miRNA: 3'- cUGGCUCaUGCC---------------UGAGCUa---CaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 8920 | 0.66 | 0.889851 |
Target: 5'- cACCGGGUuguuCGGGCU-GgcGUUGACCu -3' miRNA: 3'- cUGGCUCAu---GCCUGAgCuaCAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 23514 | 0.66 | 0.897165 |
Target: 5'- cGGCCGGGUccguACGGACgaaccgugCGGUGUUcuguguGGCUc -3' miRNA: 3'- -CUGGCUCA----UGCCUGa-------GCUACAG------UUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 12571 | 0.66 | 0.910949 |
Target: 5'- uGACCGAuGUaggucgggaACGGGCugUCGGUGcCGugCa -3' miRNA: 3'- -CUGGCU-CA---------UGCCUG--AGCUACaGUugG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 10595 | 0.66 | 0.910949 |
Target: 5'- gGACCGu---CGGG-UCGgcGUCGACCa -3' miRNA: 3'- -CUGGCucauGCCUgAGCuaCAGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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