Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7279 | 3' | -51.1 | NC_001900.1 | + | 27469 | 0.66 | 0.904199 |
Target: 5'- gGGCCGAGccgcACGGcCUUGA-GcCGGCCg -3' miRNA: 3'- -CUGGCUCa---UGCCuGAGCUaCaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 28032 | 0.66 | 0.904199 |
Target: 5'- aACCGGGUGCGGAgcCGccaccGUCAcagGCCg -3' miRNA: 3'- cUGGCUCAUGCCUgaGCua---CAGU---UGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 28960 | 0.68 | 0.821992 |
Target: 5'- cGACCcaGGUACGGGa-UGAUGUUGGCCc -3' miRNA: 3'- -CUGGc-UCAUGCCUgaGCUACAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 29950 | 0.67 | 0.882261 |
Target: 5'- cGAUCGAGgccaugACGuGAC-CGggGUCAGCg -3' miRNA: 3'- -CUGGCUCa-----UGC-CUGaGCuaCAGUUGg -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 30390 | 0.73 | 0.562484 |
Target: 5'- --aCGAGUACGGGaUCGAgaagGUCAACg -3' miRNA: 3'- cugGCUCAUGCCUgAGCUa---CAGUUGg -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 33838 | 0.7 | 0.740857 |
Target: 5'- cGGCCGAGacgccgaGGACaUCGuggaGUCAGCCa -3' miRNA: 3'- -CUGGCUCaug----CCUG-AGCua--CAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 34963 | 0.66 | 0.889851 |
Target: 5'- -cCCGguAGUG-GGugUCGAUcagGUCGACCa -3' miRNA: 3'- cuGGC--UCAUgCCugAGCUA---CAGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 37373 | 0.74 | 0.507918 |
Target: 5'- cACCGAG-ACGGGCUCGGguaGUCcAUCa -3' miRNA: 3'- cUGGCUCaUGCCUGAGCUa--CAGuUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 37416 | 0.7 | 0.697131 |
Target: 5'- cGACCucGU-CGGGCUgGGUGUC-GCCg -3' miRNA: 3'- -CUGGcuCAuGCCUGAgCUACAGuUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 40422 | 0.67 | 0.877578 |
Target: 5'- cGCCGAGcACGGguuccgagucaucgcACUCGAcgcgGcCAACCa -3' miRNA: 3'- cUGGCUCaUGCC---------------UGAGCUa---CaGUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 41609 | 0.71 | 0.674823 |
Target: 5'- -uCCG-GUGuCGGGCUCGAUGgagcacCGACCc -3' miRNA: 3'- cuGGCuCAU-GCCUGAGCUACa-----GUUGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 42188 | 0.7 | 0.740857 |
Target: 5'- cGACUcGGUGCGGACguuggUGAUGUUGuCCa -3' miRNA: 3'- -CUGGcUCAUGCCUGa----GCUACAGUuGG- -5' |
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7279 | 3' | -51.1 | NC_001900.1 | + | 44489 | 0.73 | 0.540426 |
Target: 5'- aGGCCGAcgguGUAcCGGcGCUCGAUGUCucgcuGGCCg -3' miRNA: 3'- -CUGGCU----CAU-GCC-UGAGCUACAG-----UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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