miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7285 5' -59.5 NC_001900.1 + 31289 0.68 0.373888
Target:  5'- cGCUGAcgGCaCGGCCaagaaGGAGGUCGUCGg -3'
miRNA:   3'- cCGACUcgCG-GCUGG-----UCUCCGGUAGC- -5'
7285 5' -59.5 NC_001900.1 + 32922 0.66 0.456366
Target:  5'- cGGCUGAuccacgcuuGacaGCC-ACCGGGGGCCAgcaaCGa -3'
miRNA:   3'- -CCGACU---------Cg--CGGcUGGUCUCCGGUa---GC- -5'
7285 5' -59.5 NC_001900.1 + 33304 0.7 0.248281
Target:  5'- uGGCUG-GUGCCGAaguacgccagcgucaCGGAGGCUcugGUCGa -3'
miRNA:   3'- -CCGACuCGCGGCUg--------------GUCUCCGG---UAGC- -5'
7285 5' -59.5 NC_001900.1 + 34833 0.67 0.415701
Target:  5'- cGGCgGuGCGCUGACCggucucgaugcgauGGAGaucgaccacGCCAUCGc -3'
miRNA:   3'- -CCGaCuCGCGGCUGG--------------UCUC---------CGGUAGC- -5'
7285 5' -59.5 NC_001900.1 + 36318 0.72 0.20157
Target:  5'- gGGCUccaagaacGAGCGCC-ACgCAGAGGCgAUCa -3'
miRNA:   3'- -CCGA--------CUCGCGGcUG-GUCUCCGgUAGc -5'
7285 5' -59.5 NC_001900.1 + 37247 0.67 0.408383
Target:  5'- uGGUUGccuucguGGaCGCCGACa--GGGCCGUCGu -3'
miRNA:   3'- -CCGAC-------UC-GCGGCUGgucUCCGGUAGC- -5'
7285 5' -59.5 NC_001900.1 + 39177 0.68 0.348731
Target:  5'- cGCauAGCGCCGAUC-GAGGCCAc-- -3'
miRNA:   3'- cCGacUCGCGGCUGGuCUCCGGUagc -5'
7285 5' -59.5 NC_001900.1 + 43177 0.66 0.475995
Target:  5'- gGGCUG-GCuGCUGaACCGGccAGGCCGcagCGg -3'
miRNA:   3'- -CCGACuCG-CGGC-UGGUC--UCCGGUa--GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.