miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7307 3' -56.6 NC_001900.1 + 7214 0.66 0.578786
Target:  5'- gAGCuuGGCCAgcguccgaucaccgaGGGAAUUGcGUUGGCGGg -3'
miRNA:   3'- -UCGuuCCGGU---------------UCCUUGAC-CGGUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 17203 0.66 0.57434
Target:  5'- cGCAGGGUCc-GGGGCU--CCAGCAGc -3'
miRNA:   3'- uCGUUCCGGuuCCUUGAccGGUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 44678 0.66 0.57434
Target:  5'- -aCGAGGCCAAGGAcauguuccGCUGGCacuacGCc- -3'
miRNA:   3'- ucGUUCCGGUUCCU--------UGACCGgu---CGuc -5'
7307 3' -56.6 NC_001900.1 + 32465 0.66 0.563263
Target:  5'- cGaCAAGGCCAAGGAaguccuGCUGGacguuCAGUc- -3'
miRNA:   3'- uC-GUUCCGGUUCCU------UGACCg----GUCGuc -5'
7307 3' -56.6 NC_001900.1 + 34551 0.66 0.552244
Target:  5'- gAGC-GGGUCGacAGGAGCcuUGGCCAGgcucCAGa -3'
miRNA:   3'- -UCGuUCCGGU--UCCUUG--ACCGGUC----GUC- -5'
7307 3' -56.6 NC_001900.1 + 6511 0.66 0.552244
Target:  5'- cAGCucGGCCc----GCUGGCCAGcCAGa -3'
miRNA:   3'- -UCGuuCCGGuuccuUGACCGGUC-GUC- -5'
7307 3' -56.6 NC_001900.1 + 44778 0.66 0.541291
Target:  5'- uGGCAGcGGCCAGcGGc-CUGGCUgccGCAGg -3'
miRNA:   3'- -UCGUU-CCGGUU-CCuuGACCGGu--CGUC- -5'
7307 3' -56.6 NC_001900.1 + 28179 0.66 0.541291
Target:  5'- cAGCAGcGCCucGGcGAGCUGGCCuuguGCGa -3'
miRNA:   3'- -UCGUUcCGGu-UC-CUUGACCGGu---CGUc -5'
7307 3' -56.6 NC_001900.1 + 44515 0.66 0.541291
Target:  5'- cGCGuGG-CGGGGGACUcccGGCCAGgAGa -3'
miRNA:   3'- uCGUuCCgGUUCCUUGA---CCGGUCgUC- -5'
7307 3' -56.6 NC_001900.1 + 24629 0.66 0.519612
Target:  5'- cGUggGGCCAAGGc---GGCUucGGCGGu -3'
miRNA:   3'- uCGuuCCGGUUCCuugaCCGG--UCGUC- -5'
7307 3' -56.6 NC_001900.1 + 25422 0.66 0.519612
Target:  5'- uAGCGAGGCgAAugucGGAGCUGGCaGGgAu -3'
miRNA:   3'- -UCGUUCCGgUU----CCUUGACCGgUCgUc -5'
7307 3' -56.6 NC_001900.1 + 36151 0.67 0.508901
Target:  5'- cGGCAAGGUCAucgucaAGGAc--GGCCcuGGCAGc -3'
miRNA:   3'- -UCGUUCCGGU------UCCUugaCCGG--UCGUC- -5'
7307 3' -56.6 NC_001900.1 + 6720 0.67 0.498283
Target:  5'- cGGCAggcAGGCCAGGcccgaggggaucGGGCUGGCCcGUg- -3'
miRNA:   3'- -UCGU---UCCGGUUC------------CUUGACCGGuCGuc -5'
7307 3' -56.6 NC_001900.1 + 11620 0.67 0.498283
Target:  5'- aGGCAuacGUCAAGGAGCUucGCCAGgAGg -3'
miRNA:   3'- -UCGUuc-CGGUUCCUUGAc-CGGUCgUC- -5'
7307 3' -56.6 NC_001900.1 + 43222 0.67 0.494064
Target:  5'- cGCGAGGUgGAGGucgugguccgGGCCAGCc- -3'
miRNA:   3'- uCGUUCCGgUUCCuuga------CCGGUCGuc -5'
7307 3' -56.6 NC_001900.1 + 27446 0.67 0.477355
Target:  5'- uAGCAcccucuGGGCUcugGAGGGGCUGGCUucguGCuGg -3'
miRNA:   3'- -UCGU------UCCGG---UUCCUUGACCGGu---CGuC- -5'
7307 3' -56.6 NC_001900.1 + 37371 0.67 0.477355
Target:  5'- gAGC-AGGCCAagacgAGGuucCUGGCCccgcuGCGGg -3'
miRNA:   3'- -UCGuUCCGGU-----UCCuu-GACCGGu----CGUC- -5'
7307 3' -56.6 NC_001900.1 + 2966 0.67 0.467054
Target:  5'- gAGCGAGG-CGAGcGAACUG-CCAGuCGGu -3'
miRNA:   3'- -UCGUUCCgGUUC-CUUGACcGGUC-GUC- -5'
7307 3' -56.6 NC_001900.1 + 17146 0.68 0.456869
Target:  5'- gGGUGAGGCCAGucuGGAACgucgaGGagaCGGCGGu -3'
miRNA:   3'- -UCGUUCCGGUU---CCUUGa----CCg--GUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 10636 0.68 0.456869
Target:  5'- cGGUuguGGCUuGGGAGCUGGCguGgGGu -3'
miRNA:   3'- -UCGuu-CCGGuUCCUUGACCGguCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.