miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 3' -50.6 NC_001900.1 + 16444 0.66 0.907444
Target:  5'- --cGCGGGUaugCCUUGGGuGCCuuCGGCu -3'
miRNA:   3'- cuuCGUCUA---GGAACUCuUGGugGUCG- -5'
7311 3' -50.6 NC_001900.1 + 23183 0.66 0.907444
Target:  5'- cGAGCAGAUCggUGAGc-UgGCCGGUa -3'
miRNA:   3'- cUUCGUCUAGgaACUCuuGgUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 37781 0.66 0.900357
Target:  5'- cGAGCGGAUCUacGAgGAGCCugUcgagGGCg -3'
miRNA:   3'- cUUCGUCUAGGaaCU-CUUGGugG----UCG- -5'
7311 3' -50.6 NC_001900.1 + 9275 0.66 0.892972
Target:  5'- cGAGGCuGAgcgCCgaccaGAG-GCCAUCGGCg -3'
miRNA:   3'- -CUUCGuCUa--GGaa---CUCuUGGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 21404 0.66 0.869084
Target:  5'- --uGCGGGg-CUUGAGGACaucguCACCGGCc -3'
miRNA:   3'- cuuCGUCUagGAACUCUUG-----GUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 9870 0.66 0.869084
Target:  5'- aGAGcCGGGUCCgguucgGAagcgGGACCACCGGg -3'
miRNA:   3'- cUUC-GUCUAGGaa----CU----CUUGGUGGUCg -5'
7311 3' -50.6 NC_001900.1 + 10368 0.67 0.860566
Target:  5'- cGGAGCAuGUCCggGGGAACgucgccacccuuCAUCAGCc -3'
miRNA:   3'- -CUUCGUcUAGGaaCUCUUG------------GUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 35130 0.67 0.851784
Target:  5'- cGAGGCGGGUCagUUGucGAGCCGCUAc- -3'
miRNA:   3'- -CUUCGUCUAGg-AACu-CUUGGUGGUcg -5'
7311 3' -50.6 NC_001900.1 + 6777 0.67 0.833464
Target:  5'- cGggGUAGuugCCgaUGGGcuGCCACCGGUa -3'
miRNA:   3'- -CuuCGUCua-GGa-ACUCu-UGGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 18117 0.67 0.823948
Target:  5'- -cAGcCAGGUUgaUGAcgaucuGGACCACCGGCa -3'
miRNA:   3'- cuUC-GUCUAGgaACU------CUUGGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 13737 0.67 0.823948
Target:  5'- cGAAGCGGAUCCUccGGucuGCUACU-GCg -3'
miRNA:   3'- -CUUCGUCUAGGAacUCu--UGGUGGuCG- -5'
7311 3' -50.6 NC_001900.1 + 35352 0.67 0.823948
Target:  5'- cGGAGCAGAUCUUcucgcucuccUGGGAGCUgauACCGa- -3'
miRNA:   3'- -CUUCGUCUAGGA----------ACUCUUGG---UGGUcg -5'
7311 3' -50.6 NC_001900.1 + 32922 0.68 0.814207
Target:  5'- -cGGCuGAUCCacgcUUGAcAGCCACCGGg -3'
miRNA:   3'- cuUCGuCUAGG----AACUcUUGGUGGUCg -5'
7311 3' -50.6 NC_001900.1 + 39163 0.68 0.783764
Target:  5'- cGAGGCcacaagcugaGGAgucaaaCUUGAcAGCCACCGGCa -3'
miRNA:   3'- -CUUCG----------UCUag----GAACUcUUGGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 2231 0.68 0.77325
Target:  5'- aGGGCcuggAGAUCCUUGAGuacucggguGACgGCCAGg -3'
miRNA:   3'- cUUCG----UCUAGGAACUC---------UUGgUGGUCg -5'
7311 3' -50.6 NC_001900.1 + 35579 0.68 0.77325
Target:  5'- aGAGGguGAaaucCCUUGGGGGCCAaCAGg -3'
miRNA:   3'- -CUUCguCUa---GGAACUCUUGGUgGUCg -5'
7311 3' -50.6 NC_001900.1 + 2593 0.68 0.77325
Target:  5'- -cGGCAGAUCgCUUGcAGGuuagACCGCgAGUg -3'
miRNA:   3'- cuUCGUCUAG-GAAC-UCU----UGGUGgUCG- -5'
7311 3' -50.6 NC_001900.1 + 29571 0.69 0.762575
Target:  5'- cGAGUAcGUCCgaGAGcgguCCACCGGCa -3'
miRNA:   3'- cUUCGUcUAGGaaCUCuu--GGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 3285 0.69 0.718525
Target:  5'- --uGCGGAUCCUUucaaguucgGAGggUCAacccCCGGCg -3'
miRNA:   3'- cuuCGUCUAGGAA---------CUCuuGGU----GGUCG- -5'
7311 3' -50.6 NC_001900.1 + 28616 0.7 0.695878
Target:  5'- uGAAGCGGAcgguugcCCUgGAGAugCGCguGCa -3'
miRNA:   3'- -CUUCGUCUa------GGAaCUCUugGUGguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.