miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 20765 1.11 0.000688
Target:  5'- gUCGCCGGUACAUCAAGGACCGCGACCc -3'
miRNA:   3'- -AGCGGCCAUGUAGUUCCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 43599 0.77 0.17053
Target:  5'- aCG-CGGUGCAUCcgcAGGACCGCcGCCg -3'
miRNA:   3'- aGCgGCCAUGUAGu--UCCUGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 36405 0.75 0.246448
Target:  5'- cUCGUCGGacaACGUCAAGGACgCGCugcggggugagucGACCa -3'
miRNA:   3'- -AGCGGCCa--UGUAGUUCCUG-GCG-------------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 37598 0.74 0.287793
Target:  5'- gCGCUcGUuguaGUCGGGGuACCGCGACCa -3'
miRNA:   3'- aGCGGcCAug--UAGUUCC-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 18035 0.73 0.302488
Target:  5'- gUGCCGGUGguccagaucguCAUCAAccuGGCUGCGGCCg -3'
miRNA:   3'- aGCGGCCAU-----------GUAGUUc--CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 9016 0.73 0.331984
Target:  5'- gUUGCCGucGUGCcagaccucgccuUCGAGGACCGCGuCCu -3'
miRNA:   3'- -AGCGGC--CAUGu-----------AGUUCCUGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 39999 0.73 0.341727
Target:  5'- cUCGCCGGUAUcUCGcAGGugCaUGGCCu -3'
miRNA:   3'- -AGCGGCCAUGuAGU-UCCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5753 0.72 0.36698
Target:  5'- aCGCCGGUACAaCcuGGcCCucgcuguggGCGACCa -3'
miRNA:   3'- aGCGGCCAUGUaGuuCCuGG---------CGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 24028 0.71 0.393487
Target:  5'- aCGCCGGUu--UCGAGGuggaccgaGCCGCcACCg -3'
miRNA:   3'- aGCGGCCAuguAGUUCC--------UGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 3436 0.71 0.393487
Target:  5'- cCGCCGGUcuccAguUCGAGGAacaggucgcCCGCaGGCCa -3'
miRNA:   3'- aGCGGCCA----UguAGUUCCU---------GGCG-CUGG- -5'
7311 5' -55.3 NC_001900.1 + 7090 0.71 0.397114
Target:  5'- -aGCCGGUccuCgaggauuccgaggguGUCAGGGGCaGCGACCg -3'
miRNA:   3'- agCGGCCAu--G---------------UAGUUCCUGgCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 3515 0.71 0.402595
Target:  5'- -gGCCGGUgACAUCcAGGACgccaucgaCGCGGCg -3'
miRNA:   3'- agCGGCCA-UGUAGuUCCUG--------GCGCUGg -5'
7311 5' -55.3 NC_001900.1 + 4003 0.71 0.421205
Target:  5'- cUCGgUGGUcgaGCcaggCAAGGACCGCcuGACCa -3'
miRNA:   3'- -AGCgGCCA---UGua--GUUCCUGGCG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 2536 0.71 0.430703
Target:  5'- aCGUCGGUgGCAgcccggacgCAgccGGGGCCGuCGACCu -3'
miRNA:   3'- aGCGGCCA-UGUa--------GU---UCCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 29685 0.71 0.430703
Target:  5'- gCGCaacgGGUACAUCAucaacccgauGGGCCGgCGGCUg -3'
miRNA:   3'- aGCGg---CCAUGUAGUu---------CCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 27933 0.7 0.449089
Target:  5'- -gGuuGGUGCAgucgucgUCAAGGACCGaCGAg- -3'
miRNA:   3'- agCggCCAUGU-------AGUUCCUGGC-GCUgg -5'
7311 5' -55.3 NC_001900.1 + 23401 0.7 0.459929
Target:  5'- cCGCCGGUAUAgaaCucGGcccaGCCGgGGCCg -3'
miRNA:   3'- aGCGGCCAUGUa--GuuCC----UGGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 44215 0.7 0.463906
Target:  5'- gUCGCCGGUcuucggagccucgacACcgUAAGucAUCGCGACCg -3'
miRNA:   3'- -AGCGGCCA---------------UGuaGUUCc-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5988 0.7 0.490175
Target:  5'- cCGCCcGcUACGUCGAGGAaucggCGCGAgCCg -3'
miRNA:   3'- aGCGGcC-AUGUAGUUCCUg----GCGCU-GG- -5'
7311 5' -55.3 NC_001900.1 + 14310 0.69 0.510844
Target:  5'- cCGCuugCGG-ACAUCGAcgugccuGGCCGCGACCu -3'
miRNA:   3'- aGCG---GCCaUGUAGUUc------CUGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.