miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 1359 0.66 0.705619
Target:  5'- gCGCUGGcg-GUCGccGcCCGCGACCa -3'
miRNA:   3'- aGCGGCCaugUAGUucCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1428 0.69 0.510844
Target:  5'- aUGCuCGGaUACGuUCGAGGGCCGUGGg- -3'
miRNA:   3'- aGCG-GCC-AUGU-AGUUCCUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 1443 0.67 0.6513
Target:  5'- aCGgUGaGUGCugGUCGcGGGCgGCGACCg -3'
miRNA:   3'- aGCgGC-CAUG--UAGUuCCUGgCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1771 0.66 0.726924
Target:  5'- -aGCCcgaGGUGCGUgAccGGGucACUGUGACCa -3'
miRNA:   3'- agCGG---CCAUGUAgU--UCC--UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 2219 0.67 0.618413
Target:  5'- aCGCCcucgGGUGCGUUuc-GACCGCGAg- -3'
miRNA:   3'- aGCGG----CCAUGUAGuucCUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 2536 0.71 0.430703
Target:  5'- aCGUCGGUgGCAgcccggacgCAgccGGGGCCGuCGACCu -3'
miRNA:   3'- aGCGGCCA-UGUa--------GU---UCCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 3436 0.71 0.393487
Target:  5'- cCGCCGGUcuccAguUCGAGGAacaggucgcCCGCaGGCCa -3'
miRNA:   3'- aGCGGCCA----UguAGUUCCU---------GGCG-CUGG- -5'
7311 5' -55.3 NC_001900.1 + 3515 0.71 0.402595
Target:  5'- -gGCCGGUgACAUCcAGGACgccaucgaCGCGGCg -3'
miRNA:   3'- agCGGCCA-UGUAGuUCCUG--------GCGCUGg -5'
7311 5' -55.3 NC_001900.1 + 3939 0.69 0.553194
Target:  5'- aCGCCGGUACccgccucCAcGGcgaaCGCGGCCg -3'
miRNA:   3'- aGCGGCCAUGua-----GUuCCug--GCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 4003 0.71 0.421205
Target:  5'- cUCGgUGGUcgaGCcaggCAAGGACCGCcuGACCa -3'
miRNA:   3'- -AGCgGCCA---UGua--GUUCCUGGCG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 4244 0.67 0.650205
Target:  5'- gUUGCCGGUAgAcgacgcgaguuguUUggGGucACCGcCGGCCg -3'
miRNA:   3'- -AGCGGCCAUgU-------------AGuuCC--UGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5618 0.68 0.56072
Target:  5'- gCGCUGGgcagGCAUCGGugccgccugguacuGGACCGuCGAgCg -3'
miRNA:   3'- aGCGGCCa---UGUAGUU--------------CCUGGC-GCUgG- -5'
7311 5' -55.3 NC_001900.1 + 5753 0.72 0.36698
Target:  5'- aCGCCGGUACAaCcuGGcCCucgcuguggGCGACCa -3'
miRNA:   3'- aGCGGCCAUGUaGuuCCuGG---------CGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5802 0.66 0.682943
Target:  5'- gUCGgCGGU-CAUCGAGGuuggugagcccGCCGUugauccggcgcguGACCg -3'
miRNA:   3'- -AGCgGCCAuGUAGUUCC-----------UGGCG-------------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 5988 0.7 0.490175
Target:  5'- cCGCCcGcUACGUCGAGGAaucggCGCGAgCCg -3'
miRNA:   3'- aGCGGcC-AUGUAGUUCCUg----GCGCU-GG- -5'
7311 5' -55.3 NC_001900.1 + 6390 0.66 0.691612
Target:  5'- cUCcCCGGUGgAUCAggucaccaGGGGCgucgagcaggugcuCGCGGCCa -3'
miRNA:   3'- -AGcGGCCAUgUAGU--------UCCUG--------------GCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 6414 0.67 0.673154
Target:  5'- cUGCUGGUugAcCuugacAGcGGCCGUGGCCg -3'
miRNA:   3'- aGCGGCCAugUaGu----UC-CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 7053 0.69 0.542496
Target:  5'- -aGCa-GUACGgcuUCGAGGuCCGCGACUa -3'
miRNA:   3'- agCGgcCAUGU---AGUUCCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 7090 0.71 0.397114
Target:  5'- -aGCCGGUccuCgaggauuccgaggguGUCAGGGGCaGCGACCg -3'
miRNA:   3'- agCGGCCAu--G---------------UAGUUCCUGgCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 7964 0.67 0.629376
Target:  5'- -gGCCGGUggccGCAUCGAGG--CGCaACCu -3'
miRNA:   3'- agCGGCCA----UGUAGUUCCugGCGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.