miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 9016 0.73 0.331984
Target:  5'- gUUGCCGucGUGCcagaccucgccuUCGAGGACCGCGuCCu -3'
miRNA:   3'- -AGCGGC--CAUGu-----------AGUUCCUGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 9868 0.66 0.702396
Target:  5'- -aGCCGGguccGguUCGgaagcgggaccaccGGGACCGCG-CCg -3'
miRNA:   3'- agCGGCCa---UguAGU--------------UCCUGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 10176 0.66 0.705619
Target:  5'- cCGCUGaGgcCAUC-AGGGCCGCagagaGCCg -3'
miRNA:   3'- aGCGGC-CauGUAGuUCCUGGCGc----UGG- -5'
7311 5' -55.3 NC_001900.1 + 10416 0.67 0.618413
Target:  5'- uUCGCgGcGUACGUCGGGGugCucgggucacGCcaGACCg -3'
miRNA:   3'- -AGCGgC-CAUGUAGUUCCugG---------CG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 14310 0.69 0.510844
Target:  5'- cCGCuugCGG-ACAUCGAcgugccuGGCCGCGACCu -3'
miRNA:   3'- aGCG---GCCaUGUAGUUc------CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 14605 0.67 0.6513
Target:  5'- cUCGCCGGg--GUCAc-GAUUGUGACCu -3'
miRNA:   3'- -AGCGGCCaugUAGUucCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 16992 0.66 0.716313
Target:  5'- gUCGCacuCGGcauggacgGCAUCAAGGcggcaGCCGaGACCa -3'
miRNA:   3'- -AGCG---GCCa-------UGUAGUUCC-----UGGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 17415 0.67 0.6513
Target:  5'- uUCGaCGGUGCcaugCAAGGGCuuuCGCaGACCc -3'
miRNA:   3'- -AGCgGCCAUGua--GUUCCUG---GCG-CUGG- -5'
7311 5' -55.3 NC_001900.1 + 18035 0.73 0.302488
Target:  5'- gUGCCGGUGguccagaucguCAUCAAccuGGCUGCGGCCg -3'
miRNA:   3'- aGCGGCCAU-----------GUAGUUc--CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 19701 0.66 0.726924
Target:  5'- cCGCCGGga-GUCGAGaucccgugggaGACCGCu-CCg -3'
miRNA:   3'- aGCGGCCaugUAGUUC-----------CUGGCGcuGG- -5'
7311 5' -55.3 NC_001900.1 + 20765 1.11 0.000688
Target:  5'- gUCGCCGGUACAUCAAGGACCGCGACCc -3'
miRNA:   3'- -AGCGGCCAUGUAGUUCCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 21403 0.67 0.633763
Target:  5'- gCGCCGaacACGUCGgaguagagcggguucAGGACCGCauccaucaGACCg -3'
miRNA:   3'- aGCGGCca-UGUAGU---------------UCCUGGCG--------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 22493 0.66 0.726924
Target:  5'- gCGCUGa-ACAUCGAGcGCCGCGAa- -3'
miRNA:   3'- aGCGGCcaUGUAGUUCcUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 23401 0.7 0.459929
Target:  5'- cCGCCGGUAUAgaaCucGGcccaGCCGgGGCCg -3'
miRNA:   3'- aGCGGCCAUGUa--GuuCC----UGGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23437 0.68 0.607461
Target:  5'- cCGCaCGGUuCGUCcguacGGACC-CGGCCg -3'
miRNA:   3'- aGCG-GCCAuGUAGuu---CCUGGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23682 0.68 0.563954
Target:  5'- uUCGUCGGcucgGCGUUcaacugcuccuGGGGAgCCGgGACCa -3'
miRNA:   3'- -AGCGGCCa---UGUAG-----------UUCCU-GGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23714 0.69 0.542496
Target:  5'- aCGCCGGUagcccaacuGCG-CGAGGuuCGCG-CCa -3'
miRNA:   3'- aGCGGCCA---------UGUaGUUCCugGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 24028 0.71 0.393487
Target:  5'- aCGCCGGUu--UCGAGGuggaccgaGCCGCcACCg -3'
miRNA:   3'- aGCGGCCAuguAGUUCC--------UGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 24607 0.66 0.734297
Target:  5'- gUGCCGGgAUGUUGuAGGuguacgcgccgaccGCCGUGACCg -3'
miRNA:   3'- aGCGGCCaUGUAGU-UCC--------------UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 25537 0.67 0.662241
Target:  5'- aCGCUGGcgGC-UCAGgccGGugCGaCGACCa -3'
miRNA:   3'- aGCGGCCa-UGuAGUU---CCugGC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.