Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7311 | 5' | -55.3 | NC_001900.1 | + | 40140 | 0.66 | 0.705619 |
Target: 5'- -aGCCGcGUcCAgc-AGGACCGCuGCCg -3' miRNA: 3'- agCGGC-CAuGUaguUCCUGGCGcUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 10176 | 0.66 | 0.705619 |
Target: 5'- cCGCUGaGgcCAUC-AGGGCCGCagagaGCCg -3' miRNA: 3'- aGCGGC-CauGUAGuUCCUGGCGc----UGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 40301 | 0.66 | 0.684028 |
Target: 5'- -gGCCGGUcgGCAgUGAGccGCUGCGGCCg -3' miRNA: 3'- agCGGCCA--UGUaGUUCc-UGGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 17415 | 0.67 | 0.6513 |
Target: 5'- uUCGaCGGUGCcaugCAAGGGCuuuCGCaGACCc -3' miRNA: 3'- -AGCgGCCAUGua--GUUCCUG---GCG-CUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 19701 | 0.66 | 0.726924 |
Target: 5'- cCGCCGGga-GUCGAGaucccgugggaGACCGCu-CCg -3' miRNA: 3'- aGCGGCCaugUAGUUC-----------CUGGCGcuGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 29567 | 0.66 | 0.704545 |
Target: 5'- gCGCCGaGUACGUcCGAGaGcgguccaccggcaGCCGcCGGCCc -3' miRNA: 3'- aGCGGC-CAUGUA-GUUC-C-------------UGGC-GCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 36689 | 0.67 | 0.640342 |
Target: 5'- cUCGCUGGaGCugAUCc---GCCGCGACCg -3' miRNA: 3'- -AGCGGCCaUG--UAGuuccUGGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 22493 | 0.66 | 0.726924 |
Target: 5'- gCGCUGa-ACAUCGAGcGCCGCGAa- -3' miRNA: 3'- aGCGGCcaUGUAGUUCcUGGCGCUgg -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 7964 | 0.67 | 0.629376 |
Target: 5'- -gGCCGGUggccGCAUCGAGG--CGCaACCu -3' miRNA: 3'- agCGGCCA----UGUAGUUCCugGCGcUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 34215 | 0.66 | 0.705619 |
Target: 5'- gCGCCGGuUGCGauccagaaccucUCGGcucuucGGAUCaGCGACCg -3' miRNA: 3'- aGCGGCC-AUGU------------AGUU------CCUGG-CGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 35770 | 0.66 | 0.726924 |
Target: 5'- cCGCCGacGUACugcUCcAGGucgucCUGCGACCa -3' miRNA: 3'- aGCGGC--CAUGu--AGuUCCu----GGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 6390 | 0.66 | 0.691612 |
Target: 5'- cUCcCCGGUGgAUCAggucaccaGGGGCgucgagcaggugcuCGCGGCCa -3' miRNA: 3'- -AGcGGCCAUgUAGU--------UCCUG--------------GCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 26679 | 0.66 | 0.685113 |
Target: 5'- -gGaCCGGauccccgagaGGGGGCCGCGACCu -3' miRNA: 3'- agC-GGCCauguag----UUCCUGGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 14605 | 0.67 | 0.6513 |
Target: 5'- cUCGCCGGg--GUCAc-GAUUGUGACCu -3' miRNA: 3'- -AGCGGCCaugUAGUucCUGGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 42525 | 0.67 | 0.6513 |
Target: 5'- -gGaCCGGcGCAUaCAAGGACCaacUGACCu -3' miRNA: 3'- agC-GGCCaUGUA-GUUCCUGGc--GCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 23437 | 0.68 | 0.607461 |
Target: 5'- cCGCaCGGUuCGUCcguacGGACC-CGGCCg -3' miRNA: 3'- aGCG-GCCAuGUAGuu---CCUGGcGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 1443 | 0.67 | 0.6513 |
Target: 5'- aCGgUGaGUGCugGUCGcGGGCgGCGACCg -3' miRNA: 3'- aGCgGC-CAUG--UAGUuCCUGgCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 14310 | 0.69 | 0.510844 |
Target: 5'- cCGCuugCGG-ACAUCGAcgugccuGGCCGCGACCu -3' miRNA: 3'- aGCG---GCCaUGUAGUUc------CUGGCGCUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 36405 | 0.75 | 0.246448 |
Target: 5'- cUCGUCGGacaACGUCAAGGACgCGCugcggggugagucGACCa -3' miRNA: 3'- -AGCGGCCa--UGUAGUUCCUG-GCG-------------CUGG- -5' |
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7311 | 5' | -55.3 | NC_001900.1 | + | 23714 | 0.69 | 0.542496 |
Target: 5'- aCGCCGGUagcccaacuGCG-CGAGGuuCGCG-CCa -3' miRNA: 3'- aGCGGCCA---------UGUaGUUCCugGCGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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