miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 20765 1.11 0.000688
Target:  5'- gUCGCCGGUACAUCAAGGACCGCGACCc -3'
miRNA:   3'- -AGCGGCCAUGUAGUUCCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23437 0.68 0.607461
Target:  5'- cCGCaCGGUuCGUCcguacGGACC-CGGCCg -3'
miRNA:   3'- aGCG-GCCAuGUAGuu---CCUGGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 36689 0.67 0.640342
Target:  5'- cUCGCUGGaGCugAUCc---GCCGCGACCg -3'
miRNA:   3'- -AGCGGCCaUG--UAGuuccUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 35770 0.66 0.726924
Target:  5'- cCGCCGacGUACugcUCcAGGucgucCUGCGACCa -3'
miRNA:   3'- aGCGGC--CAUGu--AGuUCCu----GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 39999 0.73 0.341727
Target:  5'- cUCGCCGGUAUcUCGcAGGugCaUGGCCu -3'
miRNA:   3'- -AGCGGCCAUGuAGU-UCCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5753 0.72 0.36698
Target:  5'- aCGCCGGUACAaCcuGGcCCucgcuguggGCGACCa -3'
miRNA:   3'- aGCGGCCAUGUaGuuCCuGG---------CGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 4003 0.71 0.421205
Target:  5'- cUCGgUGGUcgaGCcaggCAAGGACCGCcuGACCa -3'
miRNA:   3'- -AGCgGCCA---UGua--GUUCCUGGCG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 44215 0.7 0.463906
Target:  5'- gUCGCCGGUcuucggagccucgacACcgUAAGucAUCGCGACCg -3'
miRNA:   3'- -AGCGGCCA---------------UGuaGUUCc-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 42953 0.69 0.521314
Target:  5'- aCGuuGGUGugaccgccucCGUCGAGGGggacgcgaagccUCGCGGCCg -3'
miRNA:   3'- aGCggCCAU----------GUAGUUCCU------------GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 30025 0.68 0.589987
Target:  5'- gCGCCGGgaugccagugaucgACAUgcgCGAGGuCCGCG-CCu -3'
miRNA:   3'- aGCGGCCa-------------UGUA---GUUCCuGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 3939 0.69 0.553194
Target:  5'- aCGCCGGUACccgccucCAcGGcgaaCGCGGCCg -3'
miRNA:   3'- aGCGGCCAUGua-----GUuCCug--GCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1428 0.69 0.510844
Target:  5'- aUGCuCGGaUACGuUCGAGGGCCGUGGg- -3'
miRNA:   3'- aGCG-GCC-AUGU-AGUUCCUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 43599 0.77 0.17053
Target:  5'- aCG-CGGUGCAUCcgcAGGACCGCcGCCg -3'
miRNA:   3'- aGCgGCCAUGUAGu--UCCUGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 5618 0.68 0.56072
Target:  5'- gCGCUGGgcagGCAUCGGugccgccugguacuGGACCGuCGAgCg -3'
miRNA:   3'- aGCGGCCa---UGUAGUU--------------CCUGGC-GCUgG- -5'
7311 5' -55.3 NC_001900.1 + 37598 0.74 0.287793
Target:  5'- gCGCUcGUuguaGUCGGGGuACCGCGACCa -3'
miRNA:   3'- aGCGGcCAug--UAGUUCC-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5988 0.7 0.490175
Target:  5'- cCGCCcGcUACGUCGAGGAaucggCGCGAgCCg -3'
miRNA:   3'- aGCGGcC-AUGUAGUUCCUg----GCGCU-GG- -5'
7311 5' -55.3 NC_001900.1 + 23682 0.68 0.563954
Target:  5'- uUCGUCGGcucgGCGUUcaacugcuccuGGGGAgCCGgGACCa -3'
miRNA:   3'- -AGCGGCCa---UGUAG-----------UUCCU-GGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 7964 0.67 0.629376
Target:  5'- -gGCCGGUggccGCAUCGAGG--CGCaACCu -3'
miRNA:   3'- agCGGCCA----UGUAGUUCCugGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 18035 0.73 0.302488
Target:  5'- gUGCCGGUGguccagaucguCAUCAAccuGGCUGCGGCCg -3'
miRNA:   3'- aGCGGCCAU-----------GUAGUUc--CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 3515 0.71 0.402595
Target:  5'- -gGCCGGUgACAUCcAGGACgccaucgaCGCGGCg -3'
miRNA:   3'- agCGGCCA-UGUAGuUCCUG--------GCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.