miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 3436 0.71 0.393487
Target:  5'- cCGCCGGUcuccAguUCGAGGAacaggucgcCCGCaGGCCa -3'
miRNA:   3'- aGCGGCCA----UguAGUUCCU---------GGCG-CUGG- -5'
7311 5' -55.3 NC_001900.1 + 44764 0.68 0.585631
Target:  5'- -gGCCuGGcUGCcgCAgGGGACCGCGuuCCa -3'
miRNA:   3'- agCGG-CC-AUGuaGU-UCCUGGCGCu-GG- -5'
7311 5' -55.3 NC_001900.1 + 23714 0.69 0.542496
Target:  5'- aCGCCGGUagcccaacuGCG-CGAGGuuCGCG-CCa -3'
miRNA:   3'- aGCGGCCA---------UGUaGUUCCugGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 14310 0.69 0.510844
Target:  5'- cCGCuugCGG-ACAUCGAcgugccuGGCCGCGACCu -3'
miRNA:   3'- aGCG---GCCaUGUAGUUc------CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23401 0.7 0.459929
Target:  5'- cCGCCGGUAUAgaaCucGGcccaGCCGgGGCCg -3'
miRNA:   3'- aGCGGCCAUGUa--GuuCC----UGGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 27933 0.7 0.449089
Target:  5'- -gGuuGGUGCAgucgucgUCAAGGACCGaCGAg- -3'
miRNA:   3'- agCggCCAUGU-------AGUUCCUGGC-GCUgg -5'
7311 5' -55.3 NC_001900.1 + 2536 0.71 0.430703
Target:  5'- aCGUCGGUgGCAgcccggacgCAgccGGGGCCGuCGACCu -3'
miRNA:   3'- aGCGGCCA-UGUa--------GU---UCCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 29685 0.71 0.430703
Target:  5'- gCGCaacgGGUACAUCAucaacccgauGGGCCGgCGGCUg -3'
miRNA:   3'- aGCGg---CCAUGUAGUu---------CCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 7090 0.71 0.397114
Target:  5'- -aGCCGGUccuCgaggauuccgaggguGUCAGGGGCaGCGACCg -3'
miRNA:   3'- agCGGCCAu--G---------------UAGUUCCUGgCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 33876 0.68 0.596531
Target:  5'- aCGaaGGacaccUugGUCGAGG-CCGUGGCCg -3'
miRNA:   3'- aGCggCC-----AugUAGUUCCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 10416 0.67 0.618413
Target:  5'- uUCGCgGcGUACGUCGGGGugCucgggucacGCcaGACCg -3'
miRNA:   3'- -AGCGgC-CAUGUAGUUCCugG---------CG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 2219 0.67 0.618413
Target:  5'- aCGCCcucgGGUGCGUUuc-GACCGCGAg- -3'
miRNA:   3'- aGCGG----CCAUGUAGuucCUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 9868 0.66 0.702396
Target:  5'- -aGCCGGguccGguUCGgaagcgggaccaccGGGACCGCG-CCg -3'
miRNA:   3'- agCGGCCa---UguAGU--------------UCCUGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 28050 0.66 0.694854
Target:  5'- cCGCCGGgggcgGCGUCAAcGugC-CGAUCu -3'
miRNA:   3'- aGCGGCCa----UGUAGUUcCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5802 0.66 0.682943
Target:  5'- gUCGgCGGU-CAUCGAGGuuggugagcccGCCGUugauccggcgcguGACCg -3'
miRNA:   3'- -AGCgGCCAuGUAGUUCC-----------UGGCG-------------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 6414 0.67 0.673154
Target:  5'- cUGCUGGUugAcCuugacAGcGGCCGUGGCCg -3'
miRNA:   3'- aGCGGCCAugUaGu----UC-CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 25537 0.67 0.662241
Target:  5'- aCGCUGGcgGC-UCAGgccGGugCGaCGACCa -3'
miRNA:   3'- aGCGGCCa-UGuAGUU---CCugGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1443 0.67 0.6513
Target:  5'- aCGgUGaGUGCugGUCGcGGGCgGCGACCg -3'
miRNA:   3'- aGCgGC-CAUG--UAGUuCCUGgCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 4244 0.67 0.650205
Target:  5'- gUUGCCGGUAgAcgacgcgaguuguUUggGGucACCGcCGGCCg -3'
miRNA:   3'- -AGCGGCCAUgU-------------AGuuCC--UGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 21403 0.67 0.633763
Target:  5'- gCGCCGaacACGUCGgaguagagcggguucAGGACCGCauccaucaGACCg -3'
miRNA:   3'- aGCGGCca-UGUAGU---------------UCCUGGCG--------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.