miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 44764 0.68 0.585631
Target:  5'- -gGCCuGGcUGCcgCAgGGGACCGCGuuCCa -3'
miRNA:   3'- agCGG-CC-AUGuaGU-UCCUGGCGCu-GG- -5'
7311 5' -55.3 NC_001900.1 + 44215 0.7 0.463906
Target:  5'- gUCGCCGGUcuucggagccucgacACcgUAAGucAUCGCGACCg -3'
miRNA:   3'- -AGCGGCCA---------------UGuaGUUCc-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 43599 0.77 0.17053
Target:  5'- aCG-CGGUGCAUCcgcAGGACCGCcGCCg -3'
miRNA:   3'- aGCgGCCAUGUAGu--UCCUGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 42953 0.69 0.521314
Target:  5'- aCGuuGGUGugaccgccucCGUCGAGGGggacgcgaagccUCGCGGCCg -3'
miRNA:   3'- aGCggCCAU----------GUAGUUCCU------------GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 42525 0.67 0.6513
Target:  5'- -gGaCCGGcGCAUaCAAGGACCaacUGACCu -3'
miRNA:   3'- agC-GGCCaUGUA-GUUCCUGGc--GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 40301 0.66 0.684028
Target:  5'- -gGCCGGUcgGCAgUGAGccGCUGCGGCCg -3'
miRNA:   3'- agCGGCCA--UGUaGUUCc-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 40140 0.66 0.705619
Target:  5'- -aGCCGcGUcCAgc-AGGACCGCuGCCg -3'
miRNA:   3'- agCGGC-CAuGUaguUCCUGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 39999 0.73 0.341727
Target:  5'- cUCGCCGGUAUcUCGcAGGugCaUGGCCu -3'
miRNA:   3'- -AGCGGCCAUGuAGU-UCCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 37598 0.74 0.287793
Target:  5'- gCGCUcGUuguaGUCGGGGuACCGCGACCa -3'
miRNA:   3'- aGCGGcCAug--UAGUUCC-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 36689 0.67 0.640342
Target:  5'- cUCGCUGGaGCugAUCc---GCCGCGACCg -3'
miRNA:   3'- -AGCGGCCaUG--UAGuuccUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 36405 0.75 0.246448
Target:  5'- cUCGUCGGacaACGUCAAGGACgCGCugcggggugagucGACCa -3'
miRNA:   3'- -AGCGGCCa--UGUAGUUCCUG-GCG-------------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 35770 0.66 0.726924
Target:  5'- cCGCCGacGUACugcUCcAGGucgucCUGCGACCa -3'
miRNA:   3'- aGCGGC--CAUGu--AGuUCCu----GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 34215 0.66 0.705619
Target:  5'- gCGCCGGuUGCGauccagaaccucUCGGcucuucGGAUCaGCGACCg -3'
miRNA:   3'- aGCGGCC-AUGU------------AGUU------CCUGG-CGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 33876 0.68 0.596531
Target:  5'- aCGaaGGacaccUugGUCGAGG-CCGUGGCCg -3'
miRNA:   3'- aGCggCC-----AugUAGUUCCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 30025 0.68 0.589987
Target:  5'- gCGCCGGgaugccagugaucgACAUgcgCGAGGuCCGCG-CCu -3'
miRNA:   3'- aGCGGCCa-------------UGUA---GUUCCuGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 29685 0.71 0.430703
Target:  5'- gCGCaacgGGUACAUCAucaacccgauGGGCCGgCGGCUg -3'
miRNA:   3'- aGCGg---CCAUGUAGUu---------CCUGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 29567 0.66 0.704545
Target:  5'- gCGCCGaGUACGUcCGAGaGcgguccaccggcaGCCGcCGGCCc -3'
miRNA:   3'- aGCGGC-CAUGUA-GUUC-C-------------UGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 28050 0.66 0.694854
Target:  5'- cCGCCGGgggcgGCGUCAAcGugC-CGAUCu -3'
miRNA:   3'- aGCGGCCa----UGUAGUUcCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 27933 0.7 0.449089
Target:  5'- -gGuuGGUGCAgucgucgUCAAGGACCGaCGAg- -3'
miRNA:   3'- agCggCCAUGU-------AGUUCCUGGC-GCUgg -5'
7311 5' -55.3 NC_001900.1 + 26679 0.66 0.685113
Target:  5'- -gGaCCGGauccccgagaGGGGGCCGCGACCu -3'
miRNA:   3'- agC-GGCCauguag----UUCCUGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.