miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 14605 0.67 0.6513
Target:  5'- cUCGCCGGg--GUCAc-GAUUGUGACCu -3'
miRNA:   3'- -AGCGGCCaugUAGUucCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 17415 0.67 0.6513
Target:  5'- uUCGaCGGUGCcaugCAAGGGCuuuCGCaGACCc -3'
miRNA:   3'- -AGCgGCCAUGua--GUUCCUG---GCG-CUGG- -5'
7311 5' -55.3 NC_001900.1 + 42525 0.67 0.6513
Target:  5'- -gGaCCGGcGCAUaCAAGGACCaacUGACCu -3'
miRNA:   3'- agC-GGCCaUGUA-GUUCCUGGc--GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 4244 0.67 0.650205
Target:  5'- gUUGCCGGUAgAcgacgcgaguuguUUggGGucACCGcCGGCCg -3'
miRNA:   3'- -AGCGGCCAUgU-------------AGuuCC--UGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 36689 0.67 0.640342
Target:  5'- cUCGCUGGaGCugAUCc---GCCGCGACCg -3'
miRNA:   3'- -AGCGGCCaUG--UAGuuccUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 21403 0.67 0.633763
Target:  5'- gCGCCGaacACGUCGgaguagagcggguucAGGACCGCauccaucaGACCg -3'
miRNA:   3'- aGCGGCca-UGUAGU---------------UCCUGGCG--------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 7964 0.67 0.629376
Target:  5'- -gGCCGGUggccGCAUCGAGG--CGCaACCu -3'
miRNA:   3'- agCGGCCA----UGUAGUUCCugGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 2219 0.67 0.618413
Target:  5'- aCGCCcucgGGUGCGUUuc-GACCGCGAg- -3'
miRNA:   3'- aGCGG----CCAUGUAGuucCUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 10416 0.67 0.618413
Target:  5'- uUCGCgGcGUACGUCGGGGugCucgggucacGCcaGACCg -3'
miRNA:   3'- -AGCGgC-CAUGUAGUUCCugG---------CG--CUGG- -5'
7311 5' -55.3 NC_001900.1 + 23437 0.68 0.607461
Target:  5'- cCGCaCGGUuCGUCcguacGGACC-CGGCCg -3'
miRNA:   3'- aGCG-GCCAuGUAGuu---CCUGGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 33876 0.68 0.596531
Target:  5'- aCGaaGGacaccUugGUCGAGG-CCGUGGCCg -3'
miRNA:   3'- aGCggCC-----AugUAGUUCCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 30025 0.68 0.589987
Target:  5'- gCGCCGGgaugccagugaucgACAUgcgCGAGGuCCGCG-CCu -3'
miRNA:   3'- aGCGGCCa-------------UGUA---GUUCCuGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 44764 0.68 0.585631
Target:  5'- -gGCCuGGcUGCcgCAgGGGACCGCGuuCCa -3'
miRNA:   3'- agCGG-CC-AUGuaGU-UCCUGGCGCu-GG- -5'
7311 5' -55.3 NC_001900.1 + 23682 0.68 0.563954
Target:  5'- uUCGUCGGcucgGCGUUcaacugcuccuGGGGAgCCGgGACCa -3'
miRNA:   3'- -AGCGGCCa---UGUAG-----------UUCCU-GGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5618 0.68 0.56072
Target:  5'- gCGCUGGgcagGCAUCGGugccgccugguacuGGACCGuCGAgCg -3'
miRNA:   3'- aGCGGCCa---UGUAGUU--------------CCUGGC-GCUgG- -5'
7311 5' -55.3 NC_001900.1 + 3939 0.69 0.553194
Target:  5'- aCGCCGGUACccgccucCAcGGcgaaCGCGGCCg -3'
miRNA:   3'- aGCGGCCAUGua-----GUuCCug--GCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 23714 0.69 0.542496
Target:  5'- aCGCCGGUagcccaacuGCG-CGAGGuuCGCG-CCa -3'
miRNA:   3'- aGCGGCCA---------UGUaGUUCCugGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 7053 0.69 0.542496
Target:  5'- -aGCa-GUACGgcuUCGAGGuCCGCGACUa -3'
miRNA:   3'- agCGgcCAUGU---AGUUCCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 42953 0.69 0.521314
Target:  5'- aCGuuGGUGugaccgccucCGUCGAGGGggacgcgaagccUCGCGGCCg -3'
miRNA:   3'- aGCggCCAU----------GUAGUUCCU------------GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1428 0.69 0.510844
Target:  5'- aUGCuCGGaUACGuUCGAGGGCCGUGGg- -3'
miRNA:   3'- aGCG-GCC-AUGU-AGUUCCUGGCGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.