miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7350 5' -57.7 NC_001900.1 + 31738 0.66 0.577395
Target:  5'- aGCGAggagauguCC-GAACGCGUUGgcuCCUGCGUUg -3'
miRNA:   3'- -CGCU--------GGuCUUGCGCAAC---GGGCGCGAg -5'
7350 5' -57.7 NC_001900.1 + 20041 0.66 0.577394
Target:  5'- aGUGGCCuGAcgaGCGUUGCCCaG-GCUg -3'
miRNA:   3'- -CGCUGGuCUug-CGCAACGGG-CgCGAg -5'
7350 5' -57.7 NC_001900.1 + 906 0.66 0.577394
Target:  5'- uCGACCAG-GCGC-UUuUCCGCGCUg -3'
miRNA:   3'- cGCUGGUCuUGCGcAAcGGGCGCGAg -5'
7350 5' -57.7 NC_001900.1 + 44829 0.66 0.56662
Target:  5'- cGCGGCCAuuuCGcCGUUGCCggucaaCGCGgUCu -3'
miRNA:   3'- -CGCUGGUcuuGC-GCAACGG------GCGCgAG- -5'
7350 5' -57.7 NC_001900.1 + 34646 0.66 0.555899
Target:  5'- cGUGGCCGaacucaagggcGAACGCGUuggGCgCGUGCa- -3'
miRNA:   3'- -CGCUGGU-----------CUUGCGCAa--CGgGCGCGag -5'
7350 5' -57.7 NC_001900.1 + 49001 0.66 0.534641
Target:  5'- aGCG-CCuGGGCgaggcgcucuaGCGUcgGCCCGUGCUUc -3'
miRNA:   3'- -CGCuGGuCUUG-----------CGCAa-CGGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 44251 0.66 0.534641
Target:  5'- cGCGACCGcGAGCGCGUacacGCCga-GCUg -3'
miRNA:   3'- -CGCUGGU-CUUGCGCAa---CGGgcgCGAg -5'
7350 5' -57.7 NC_001900.1 + 40316 0.66 0.533586
Target:  5'- cGCGACCacgucguaccgggAGAACGCGgaaUGCaCUGCaGCg- -3'
miRNA:   3'- -CGCUGG-------------UCUUGCGCa--ACG-GGCG-CGag -5'
7350 5' -57.7 NC_001900.1 + 25487 0.66 0.52412
Target:  5'- cCGACCGuaGGCGCGUUGUCguugaCGCGCa- -3'
miRNA:   3'- cGCUGGUc-UUGCGCAACGG-----GCGCGag -5'
7350 5' -57.7 NC_001900.1 + 47294 0.66 0.52412
Target:  5'- uUGGCaCAGAACGCGgucgcGUCCGgGCa- -3'
miRNA:   3'- cGCUG-GUCUUGCGCaa---CGGGCgCGag -5'
7350 5' -57.7 NC_001900.1 + 48552 0.67 0.513678
Target:  5'- uUGGCCGGAACGUagGUUGUCgGcCGCa- -3'
miRNA:   3'- cGCUGGUCUUGCG--CAACGGgC-GCGag -5'
7350 5' -57.7 NC_001900.1 + 22809 0.67 0.513678
Target:  5'- uGCGAUCAuGGACGCGcucagcgaagGUCCGCuGUUCc -3'
miRNA:   3'- -CGCUGGU-CUUGCGCaa--------CGGGCG-CGAG- -5'
7350 5' -57.7 NC_001900.1 + 33287 0.67 0.503322
Target:  5'- cGUGAUCGacAACGCGUcgGCCgGCGCa- -3'
miRNA:   3'- -CGCUGGUc-UUGCGCAa-CGGgCGCGag -5'
7350 5' -57.7 NC_001900.1 + 4293 0.67 0.503322
Target:  5'- gGCGGuuccCCAGAGCGUGgggaGCCCcCGCa- -3'
miRNA:   3'- -CGCU----GGUCUUGCGCaa--CGGGcGCGag -5'
7350 5' -57.7 NC_001900.1 + 38246 0.67 0.502292
Target:  5'- uGCGGggaagcuCCGGGugGUGgaGUCUGCGCUg -3'
miRNA:   3'- -CGCU-------GGUCUugCGCaaCGGGCGCGAg -5'
7350 5' -57.7 NC_001900.1 + 47716 0.67 0.46287
Target:  5'- gGCGACCGccAGCGCGUUGaacgCCGCacGCUUc -3'
miRNA:   3'- -CGCUGGUc-UUGCGCAACg---GGCG--CGAG- -5'
7350 5' -57.7 NC_001900.1 + 32455 0.67 0.46287
Target:  5'- uUGACCGGAACGuCGgccgacaGCUCcCGCUCg -3'
miRNA:   3'- cGCUGGUCUUGC-GCaa-----CGGGcGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 45042 0.67 0.46287
Target:  5'- aCGGCCAGAugGUcaggcgGUccuUGCCUG-GCUCg -3'
miRNA:   3'- cGCUGGUCUugCG------CA---ACGGGCgCGAG- -5'
7350 5' -57.7 NC_001900.1 + 33655 0.67 0.46287
Target:  5'- gGCGuCCGGGuCGaCGUUGgCCGUgaaGCUCa -3'
miRNA:   3'- -CGCuGGUCUuGC-GCAACgGGCG---CGAG- -5'
7350 5' -57.7 NC_001900.1 + 19095 0.68 0.443292
Target:  5'- gGUGACCAGGGCGUGUU-CCUG-GC-Ca -3'
miRNA:   3'- -CGCUGGUCUUGCGCAAcGGGCgCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.