miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7351 3' -52.1 NC_001900.1 + 6620 0.66 0.893386
Target:  5'- aCGCUGuACUUCucgGCGGACUCCG-ACgCGu -3'
miRNA:   3'- gGUGGC-UGAAG---CGCUUGAGGUaUG-GC- -5'
7351 3' -52.1 NC_001900.1 + 25993 0.66 0.886014
Target:  5'- gCUACCuGGC-UCGCGGugUCCcgcaGCCa -3'
miRNA:   3'- -GGUGG-CUGaAGCGCUugAGGua--UGGc -5'
7351 3' -52.1 NC_001900.1 + 24246 0.66 0.886014
Target:  5'- aCCACCGGCagCGaUGAGCgugCCAccGCCc -3'
miRNA:   3'- -GGUGGCUGaaGC-GCUUGa--GGUa-UGGc -5'
7351 3' -52.1 NC_001900.1 + 8843 0.66 0.886014
Target:  5'- uCCACCGAgcgauCUUCGCGGgccACUCgAUGg-- -3'
miRNA:   3'- -GGUGGCU-----GAAGCGCU---UGAGgUAUggc -5'
7351 3' -52.1 NC_001900.1 + 41992 0.66 0.870477
Target:  5'- gUCACCGucguggGCguagUCGCGGACcucgaagCCGUACUGc -3'
miRNA:   3'- -GGUGGC------UGa---AGCGCUUGa------GGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 19840 0.66 0.862324
Target:  5'- aCACCGACcgaCGCGAggagcagaucaGCUCCGagUCGg -3'
miRNA:   3'- gGUGGCUGaa-GCGCU-----------UGAGGUauGGC- -5'
7351 3' -52.1 NC_001900.1 + 20777 0.66 0.853924
Target:  5'- aCGCgGACUucgUCGCGGGuCUCCAcggaGCCc -3'
miRNA:   3'- gGUGgCUGA---AGCGCUU-GAGGUa---UGGc -5'
7351 3' -52.1 NC_001900.1 + 17187 0.66 0.853924
Target:  5'- uUCACCGACguggugUCGCaggguccgGGGCUCCAgcagcuCCa -3'
miRNA:   3'- -GGUGGCUGa-----AGCG--------CUUGAGGUau----GGc -5'
7351 3' -52.1 NC_001900.1 + 21538 0.67 0.845286
Target:  5'- aCCGCCGACUUCcucggcGUGAGCaCCAagacggugcGCCGc -3'
miRNA:   3'- -GGUGGCUGAAG------CGCUUGaGGUa--------UGGC- -5'
7351 3' -52.1 NC_001900.1 + 32961 0.67 0.845286
Target:  5'- aCACCgGACU---UGAACUCCAUcuuGCCGu -3'
miRNA:   3'- gGUGG-CUGAagcGCUUGAGGUA---UGGC- -5'
7351 3' -52.1 NC_001900.1 + 41376 0.67 0.84441
Target:  5'- gCCGCCGGaucacgcCUUCGCGGuagaCGUACUGg -3'
miRNA:   3'- -GGUGGCU-------GAAGCGCUugagGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 29291 0.67 0.836418
Target:  5'- -aGCCGGCgguUgGCGAACUCCucguCCu -3'
miRNA:   3'- ggUGGCUGa--AgCGCUUGAGGuau-GGc -5'
7351 3' -52.1 NC_001900.1 + 33258 0.67 0.836418
Target:  5'- aCCA-CGGCUUCGCGGGC-CUucugGCCc -3'
miRNA:   3'- -GGUgGCUGAAGCGCUUGaGGua--UGGc -5'
7351 3' -52.1 NC_001900.1 + 44460 0.67 0.836418
Target:  5'- gCCACgCGAagaaCUUCuCGAccuGCUCCAgGCCGa -3'
miRNA:   3'- -GGUG-GCU----GAAGcGCU---UGAGGUaUGGC- -5'
7351 3' -52.1 NC_001900.1 + 37165 0.67 0.830991
Target:  5'- aCCGCCGAuCaguucgagguucuucUUCGCGGACUCgGcgAUCGa -3'
miRNA:   3'- -GGUGGCU-G---------------AAGCGCUUGAGgUa-UGGC- -5'
7351 3' -52.1 NC_001900.1 + 4984 0.67 0.830991
Target:  5'- aCC-CCGGCaugcUCGuCGGGCUCCAgcacggcggcggggGCCGg -3'
miRNA:   3'- -GGuGGCUGa---AGC-GCUUGAGGUa-------------UGGC- -5'
7351 3' -52.1 NC_001900.1 + 43074 0.67 0.81803
Target:  5'- gCGCCGAUUccucgacguaGCGGGCgugccCCAUGCCGu -3'
miRNA:   3'- gGUGGCUGAag--------CGCUUGa----GGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 25034 0.67 0.81803
Target:  5'- gCACCGAgguuggCGCGGGCUUCG-GCCGc -3'
miRNA:   3'- gGUGGCUgaa---GCGCUUGAGGUaUGGC- -5'
7351 3' -52.1 NC_001900.1 + 32680 0.67 0.81803
Target:  5'- --uCCGGCca-GCGAACUCCGcgaguucgucUGCCGa -3'
miRNA:   3'- gguGGCUGaagCGCUUGAGGU----------AUGGC- -5'
7351 3' -52.1 NC_001900.1 + 38167 0.67 0.816145
Target:  5'- gCCugCGACaaccccuuucgUGCGGGCUCCAUGuuCCu -3'
miRNA:   3'- -GGugGCUGaa---------GCGCUUGAGGUAU--GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.