miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 5' -54.9 NC_001900.1 + 5280 0.71 0.433141
Target:  5'- cAGCGagGAGCGGCccgACCGGGaagUCAUCa -3'
miRNA:   3'- cUCGCg-CUUGUCG---UGGCCCa--AGUAGg -5'
7353 5' -54.9 NC_001900.1 + 10653 0.67 0.668448
Target:  5'- -uGCG-GGGCu-CGCCGGGUaCGUCCa -3'
miRNA:   3'- cuCGCgCUUGucGUGGCCCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 11063 0.68 0.590734
Target:  5'- cGGGCGCGaAACAuGCGCCuGGU--GUCUg -3'
miRNA:   3'- -CUCGCGC-UUGU-CGUGGcCCAagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 16877 0.71 0.423476
Target:  5'- cAGCGUGGAuCGGCGUCGGGaUCGUCg -3'
miRNA:   3'- cUCGCGCUU-GUCGUGGCCCaAGUAGg -5'
7353 5' -54.9 NC_001900.1 + 17492 0.67 0.668448
Target:  5'- cGAGCGUGA--GGU-CCGGGa-CAUCCg -3'
miRNA:   3'- -CUCGCGCUugUCGuGGCCCaaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 20545 0.67 0.63514
Target:  5'- -uGCGCGuGCAGCAgCGaGcGUUCGaCCg -3'
miRNA:   3'- cuCGCGCuUGUCGUgGC-C-CAAGUaGG- -5'
7353 5' -54.9 NC_001900.1 + 20916 0.72 0.368316
Target:  5'- cGAGacCGCcuucGGCGGCuccuggcucACCGGGUUCGUCCg -3'
miRNA:   3'- -CUC--GCGc---UUGUCG---------UGGCCCAAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 22823 0.66 0.723111
Target:  5'- cGAGCGCGAGaagaaGGCugCGGcgaGUgcCAUCa -3'
miRNA:   3'- -CUCGCGCUUg----UCGugGCC---CAa-GUAGg -5'
7353 5' -54.9 NC_001900.1 + 24771 0.73 0.318292
Target:  5'- cGGCGCGGGCGGCAaaGGGggCGacaCCa -3'
miRNA:   3'- cUCGCGCUUGUCGUggCCCaaGUa--GG- -5'
7353 5' -54.9 NC_001900.1 + 24856 0.68 0.601805
Target:  5'- uGAGCGUGuuguCAGCcCCGGaGaUCGUCUu -3'
miRNA:   3'- -CUCGCGCuu--GUCGuGGCC-CaAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 26261 0.68 0.587419
Target:  5'- uGAGCGCGuccaugaucgcaucGACAGCACCGGuagcggUGUCg -3'
miRNA:   3'- -CUCGCGC--------------UUGUCGUGGCCcaa---GUAGg -5'
7353 5' -54.9 NC_001900.1 + 26870 0.66 0.723111
Target:  5'- -uGUGCGAGCAuCGCUcGGUUC-UCCu -3'
miRNA:   3'- cuCGCGCUUGUcGUGGcCCAAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 28978 0.66 0.712317
Target:  5'- -cGCGCuuGCAGCGCCGcaguuGGaUCuUCCg -3'
miRNA:   3'- cuCGCGcuUGUCGUGGC-----CCaAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 29363 0.66 0.712317
Target:  5'- cGGUGcCGAuCAGCACCGGaccCAUCUc -3'
miRNA:   3'- cUCGC-GCUuGUCGUGGCCcaaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 29539 0.66 0.716645
Target:  5'- cGAGaCGUGGACuggaucugguaguucAGCGCCGaGUaCGUCCg -3'
miRNA:   3'- -CUC-GCGCUUG---------------UCGUGGCcCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 29704 0.66 0.712317
Target:  5'- cAGCGCcagguACAgGUACCGGGUaccggaGUCCg -3'
miRNA:   3'- cUCGCGcu---UGU-CGUGGCCCAag----UAGG- -5'
7353 5' -54.9 NC_001900.1 + 29843 0.66 0.723111
Target:  5'- cAGCGCGAGCuGuCAUCaGGUggagGUCCg -3'
miRNA:   3'- cUCGCGCUUGuC-GUGGcCCAag--UAGG- -5'
7353 5' -54.9 NC_001900.1 + 31282 0.69 0.504131
Target:  5'- cAGCGUGGGCAGCAUCGGcugaAUCg -3'
miRNA:   3'- cUCGCGCUUGUCGUGGCCcaagUAGg -5'
7353 5' -54.9 NC_001900.1 + 32790 0.69 0.525346
Target:  5'- --cCGCGAGCGcGUACCGGuccUCAUCCc -3'
miRNA:   3'- cucGCGCUUGU-CGUGGCCca-AGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 34037 0.66 0.701441
Target:  5'- -uGCGCuucuuGAcCGGCACCGGG---AUCCg -3'
miRNA:   3'- cuCGCG-----CUuGUCGUGGCCCaagUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.