miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 5' -54.9 NC_001900.1 + 39721 0.71 0.410165
Target:  5'- cAGCGCGAugagaucagccgcCAGCuCCGGGUcagccagCAUCCa -3'
miRNA:   3'- cUCGCGCUu------------GUCGuGGCCCAa------GUAGG- -5'
7353 5' -54.9 NC_001900.1 + 24771 0.73 0.318292
Target:  5'- cGGCGCGGGCGGCAaaGGGggCGacaCCa -3'
miRNA:   3'- cUCGCGCUUGUCGUggCCCaaGUa--GG- -5'
7353 5' -54.9 NC_001900.1 + 39652 1.13 0.00051
Target:  5'- cGAGCGCGAACAGCACCGGGUUCAUCCg -3'
miRNA:   3'- -CUCGCGCUUGUCGUGGCCCAAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 43130 0.66 0.679496
Target:  5'- aGAGCauCGAGCuGCGCuCGGGUgCcgCCu -3'
miRNA:   3'- -CUCGc-GCUUGuCGUG-GCCCAaGuaGG- -5'
7353 5' -54.9 NC_001900.1 + 10653 0.67 0.668448
Target:  5'- -uGCG-GGGCu-CGCCGGGUaCGUCCa -3'
miRNA:   3'- cuCGCgCUUGucGUGGCCCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 40343 0.67 0.661802
Target:  5'- cGAGUGCGAugacucggaacccguGCucGGCgaGCCGGGUcagCAUCUc -3'
miRNA:   3'- -CUCGCGCU---------------UG--UCG--UGGCCCAa--GUAGG- -5'
7353 5' -54.9 NC_001900.1 + 29539 0.66 0.716645
Target:  5'- cGAGaCGUGGACuggaucugguaguucAGCGCCGaGUaCGUCCg -3'
miRNA:   3'- -CUC-GCGCUUG---------------UCGUGGCcCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 29363 0.66 0.712317
Target:  5'- cGGUGcCGAuCAGCACCGGaccCAUCUc -3'
miRNA:   3'- cUCGC-GCUuGUCGUGGCCcaaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 35830 0.66 0.679496
Target:  5'- -uGUGgGAACAGCuCCGGGaaCA-CCu -3'
miRNA:   3'- cuCGCgCUUGUCGuGGCCCaaGUaGG- -5'
7353 5' -54.9 NC_001900.1 + 11063 0.68 0.590734
Target:  5'- cGGGCGCGaAACAuGCGCCuGGU--GUCUg -3'
miRNA:   3'- -CUCGCGC-UUGU-CGUGGcCCAagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 16877 0.71 0.423476
Target:  5'- cAGCGUGGAuCGGCGUCGGGaUCGUCg -3'
miRNA:   3'- cUCGCGCUU-GUCGUGGCCCaAGUAGg -5'
7353 5' -54.9 NC_001900.1 + 29843 0.66 0.723111
Target:  5'- cAGCGCGAGCuGuCAUCaGGUggagGUCCg -3'
miRNA:   3'- cUCGCGCUUGuC-GUGGcCCAag--UAGG- -5'
7353 5' -54.9 NC_001900.1 + 45091 0.68 0.568707
Target:  5'- --aCGCGAGCAGCAgggugacaacCUGGGaaggaUCGUCCu -3'
miRNA:   3'- cucGCGCUUGUCGU----------GGCCCa----AGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 34037 0.66 0.701441
Target:  5'- -uGCGCuucuuGAcCGGCACCGGG---AUCCg -3'
miRNA:   3'- cuCGCG-----CUuGUCGUGGCCCaagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 41204 0.66 0.723111
Target:  5'- cAGCGCGccCAGCACCugcuggugcagcGGGUUgG-CCu -3'
miRNA:   3'- cUCGCGCuuGUCGUGG------------CCCAAgUaGG- -5'
7353 5' -54.9 NC_001900.1 + 20916 0.72 0.368316
Target:  5'- cGAGacCGCcuucGGCGGCuccuggcucACCGGGUUCGUCCg -3'
miRNA:   3'- -CUC--GCGc---UUGUCG---------UGGCCCAAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 31282 0.69 0.504131
Target:  5'- cAGCGUGGGCAGCAUCGGcugaAUCg -3'
miRNA:   3'- cUCGCGCUUGUCGUGGCCcaagUAGg -5'
7353 5' -54.9 NC_001900.1 + 32790 0.69 0.525346
Target:  5'- --cCGCGAGCGcGUACCGGuccUCAUCCc -3'
miRNA:   3'- cucGCGCUUGU-CGUGGCCca-AGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 37772 0.69 0.53608
Target:  5'- aGAGCGCGuuccuguGCGGCcuuuCCGGGccagUUC-UCCa -3'
miRNA:   3'- -CUCGCGCu------UGUCGu---GGCCC----AAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 46073 0.69 0.54689
Target:  5'- cAGUGCGGAgAGCAUCuGGUUgAUCg -3'
miRNA:   3'- cUCGCGCUUgUCGUGGcCCAAgUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.