miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 5' -54.9 NC_001900.1 + 39652 1.13 0.00051
Target:  5'- cGAGCGCGAACAGCACCGGGUUCAUCCg -3'
miRNA:   3'- -CUCGCGCUUGUCGUGGCCCAAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 42068 0.75 0.221918
Target:  5'- aGGGUGUcagGGGCAGCgACCGGGUggAUCCa -3'
miRNA:   3'- -CUCGCG---CUUGUCG-UGGCCCAagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 24771 0.73 0.318292
Target:  5'- cGGCGCGGGCGGCAaaGGGggCGacaCCa -3'
miRNA:   3'- cUCGCGCUUGUCGUggCCCaaGUa--GG- -5'
7353 5' -54.9 NC_001900.1 + 20916 0.72 0.368316
Target:  5'- cGAGacCGCcuucGGCGGCuccuggcucACCGGGUUCGUCCg -3'
miRNA:   3'- -CUC--GCGc---UUGUCG---------UGGCCCAAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 39721 0.71 0.410165
Target:  5'- cAGCGCGAugagaucagccgcCAGCuCCGGGUcagccagCAUCCa -3'
miRNA:   3'- cUCGCGCUu------------GUCGuGGCCCAa------GUAGG- -5'
7353 5' -54.9 NC_001900.1 + 16877 0.71 0.423476
Target:  5'- cAGCGUGGAuCGGCGUCGGGaUCGUCg -3'
miRNA:   3'- cUCGCGCUU-GUCGUGGCCCaAGUAGg -5'
7353 5' -54.9 NC_001900.1 + 5280 0.71 0.433141
Target:  5'- cAGCGagGAGCGGCccgACCGGGaagUCAUCa -3'
miRNA:   3'- cUCGCg-CUUGUCG---UGGCCCa--AGUAGg -5'
7353 5' -54.9 NC_001900.1 + 34673 0.7 0.483295
Target:  5'- uGGGCGCGuGCAGgACCGuGUggaaGUCCa -3'
miRNA:   3'- -CUCGCGCuUGUCgUGGCcCAag--UAGG- -5'
7353 5' -54.9 NC_001900.1 + 31282 0.69 0.504131
Target:  5'- cAGCGUGGGCAGCAUCGGcugaAUCg -3'
miRNA:   3'- cUCGCGCUUGUCGUGGCCcaagUAGg -5'
7353 5' -54.9 NC_001900.1 + 32790 0.69 0.525346
Target:  5'- --cCGCGAGCGcGUACCGGuccUCAUCCc -3'
miRNA:   3'- cucGCGCUUGU-CGUGGCCca-AGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 37772 0.69 0.53608
Target:  5'- aGAGCGCGuuccuguGCGGCcuuuCCGGGccagUUC-UCCa -3'
miRNA:   3'- -CUCGCGCu------UGUCGu---GGCCC----AAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 46073 0.69 0.54689
Target:  5'- cAGUGCGGAgAGCAUCuGGUUgAUCg -3'
miRNA:   3'- cUCGCGCUUgUCGUGGcCCAAgUAGg -5'
7353 5' -54.9 NC_001900.1 + 45091 0.68 0.568707
Target:  5'- --aCGCGAGCAGCAgggugacaacCUGGGaaggaUCGUCCu -3'
miRNA:   3'- cucGCGCUUGUCGU----------GGCCCa----AGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 26261 0.68 0.587419
Target:  5'- uGAGCGCGuccaugaucgcaucGACAGCACCGGuagcggUGUCg -3'
miRNA:   3'- -CUCGCGC--------------UUGUCGUGGCCcaa---GUAGg -5'
7353 5' -54.9 NC_001900.1 + 11063 0.68 0.590734
Target:  5'- cGGGCGCGaAACAuGCGCCuGGU--GUCUg -3'
miRNA:   3'- -CUCGCGC-UUGU-CGUGGcCCAagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 24856 0.68 0.601805
Target:  5'- uGAGCGUGuuguCAGCcCCGGaGaUCGUCUu -3'
miRNA:   3'- -CUCGCGCuu--GUCGuGGCC-CaAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 20545 0.67 0.63514
Target:  5'- -uGCGCGuGCAGCAgCGaGcGUUCGaCCg -3'
miRNA:   3'- cuCGCGCuUGUCGUgGC-C-CAAGUaGG- -5'
7353 5' -54.9 NC_001900.1 + 40090 0.67 0.657366
Target:  5'- uGGCGUucaGGACgugcugccgaAGCACCGGGUUgcCGUCg -3'
miRNA:   3'- cUCGCG---CUUG----------UCGUGGCCCAA--GUAGg -5'
7353 5' -54.9 NC_001900.1 + 40343 0.67 0.661802
Target:  5'- cGAGUGCGAugacucggaacccguGCucGGCgaGCCGGGUcagCAUCUc -3'
miRNA:   3'- -CUCGCGCU---------------UG--UCG--UGGCCCAa--GUAGG- -5'
7353 5' -54.9 NC_001900.1 + 17492 0.67 0.668448
Target:  5'- cGAGCGUGA--GGU-CCGGGa-CAUCCg -3'
miRNA:   3'- -CUCGCGCUugUCGuGGCCCaaGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.