miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7354 3' -56.4 NC_001900.1 + 18532 0.66 0.650205
Target:  5'- cGCGgGGAUGGACacgGucuucacGGCCCGGAUcuGCa -3'
miRNA:   3'- -CGCgCUUGCUUGga-C-------UCGGGCCUG--UG- -5'
7354 3' -56.4 NC_001900.1 + 1502 0.66 0.641439
Target:  5'- gGCGaUGGACGAcgccauguccaagauCCUGAGCCa-GGCGCa -3'
miRNA:   3'- -CGC-GCUUGCUu--------------GGACUCGGgcCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 24727 0.66 0.640342
Target:  5'- gGCGCuGGugGuACCgcaGGGCCUGGuuACa -3'
miRNA:   3'- -CGCG-CUugCuUGGa--CUCGGGCCugUG- -5'
7354 3' -56.4 NC_001900.1 + 47480 0.66 0.640342
Target:  5'- aCGCGAAUGAugUUGGuGCCuCGGcAgACg -3'
miRNA:   3'- cGCGCUUGCUugGACU-CGG-GCC-UgUG- -5'
7354 3' -56.4 NC_001900.1 + 13829 0.66 0.618413
Target:  5'- -aGCGggUGGACCgagaAGCCCucGGAcCACu -3'
miRNA:   3'- cgCGCuuGCUUGGac--UCGGG--CCU-GUG- -5'
7354 3' -56.4 NC_001900.1 + 15559 0.66 0.618413
Target:  5'- cGgGCGGugGAGCCUGA-CCCaaacuuGACAg -3'
miRNA:   3'- -CgCGCUugCUUGGACUcGGGc-----CUGUg -5'
7354 3' -56.4 NC_001900.1 + 1173 0.67 0.57477
Target:  5'- gGCgGCGGugGAGCCgccgGAagcgGCCgGGGCGg -3'
miRNA:   3'- -CG-CGCUugCUUGGa---CU----CGGgCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 14490 0.67 0.563955
Target:  5'- -gGUGGACGAugCguucugGAGCCUGGcCAa -3'
miRNA:   3'- cgCGCUUGCUugGa-----CUCGGGCCuGUg -5'
7354 3' -56.4 NC_001900.1 + 13117 0.67 0.553194
Target:  5'- uGCGCGAcgaguaccucuACGAGCCgccGAuCCCGGAg-- -3'
miRNA:   3'- -CGCGCU-----------UGCUUGGa--CUcGGGCCUgug -5'
7354 3' -56.4 NC_001900.1 + 7095 0.67 0.542496
Target:  5'- uCGCGAGuCGGacgGCUUcGGCCCGGACuCg -3'
miRNA:   3'- cGCGCUU-GCU---UGGAcUCGGGCCUGuG- -5'
7354 3' -56.4 NC_001900.1 + 1412 0.67 0.542496
Target:  5'- -aGCGAagAgGGACCaGAuGCUCGGAUACg -3'
miRNA:   3'- cgCGCU--UgCUUGGaCU-CGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 27454 0.68 0.531867
Target:  5'- aCGCGGAUcAGCCUGGGgCCGaGccGCACg -3'
miRNA:   3'- cGCGCUUGcUUGGACUCgGGC-C--UGUG- -5'
7354 3' -56.4 NC_001900.1 + 21945 0.68 0.521315
Target:  5'- uCGCG-AUGAGCCgUGAGgCUGGGCGu -3'
miRNA:   3'- cGCGCuUGCUUGG-ACUCgGGCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 20105 0.68 0.521315
Target:  5'- aGCGCGAGCagGAGCgaCUGaAGCCacCGGACGu -3'
miRNA:   3'- -CGCGCUUG--CUUG--GAC-UCGG--GCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 11351 0.68 0.521315
Target:  5'- uGCGuCGAGCGGAUCUacgagGAGCCUgucgaGGGCGa -3'
miRNA:   3'- -CGC-GCUUGCUUGGA-----CUCGGG-----CCUGUg -5'
7354 3' -56.4 NC_001900.1 + 31793 0.68 0.521315
Target:  5'- uGCGUGccggucgaGAUGAccgGCCcGAGCCCGGugAa -3'
miRNA:   3'- -CGCGC--------UUGCU---UGGaCUCGGGCCugUg -5'
7354 3' -56.4 NC_001900.1 + 10416 0.68 0.510844
Target:  5'- cGCGUGAGCGGGCUc--GCaaGGACAUg -3'
miRNA:   3'- -CGCGCUUGCUUGGacuCGggCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 23233 0.68 0.500463
Target:  5'- gGCGUGGACcAGCCUGcGGUUCGGugAg -3'
miRNA:   3'- -CGCGCUUGcUUGGAC-UCGGGCCugUg -5'
7354 3' -56.4 NC_001900.1 + 44743 0.68 0.490175
Target:  5'- --cCGAGCGAGCUUGuacGCCauCGGGCACu -3'
miRNA:   3'- cgcGCUUGCUUGGACu--CGG--GCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 34900 0.68 0.479987
Target:  5'- -aGCuuGCGAcCCgccGCCCGGACGCg -3'
miRNA:   3'- cgCGcuUGCUuGGacuCGGGCCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.