miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 158919 1.16 0.044551
Target:  5'- cCAAACAGAGACGAAGACGAACAAACCa -3'
miRNA:   3'- -GUUUGUCUCUGCUUCUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 211716 0.78 0.995351
Target:  5'- gCAAAgGGuuGACGAGuACGAACAAACCu -3'
miRNA:   3'- -GUUUgUCu-CUGCUUcUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 132795 0.77 0.997125
Target:  5'- ---cCGGAGACG-AGugGAGCGAcuACCa -3'
miRNA:   3'- guuuGUCUCUGCuUCugCUUGUU--UGG- -5'
757 3' -44 NC_000852.3 + 75171 0.77 0.997573
Target:  5'- cCAAACAcGGGAUGAAGGuCGGugAAGCUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCUugUUUGG- -5'
757 3' -44 NC_000852.3 + 74671 0.76 0.998829
Target:  5'- cCAAACAcGGGAUGAAGGuCGGAgAAGCUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCUUgUUUGG- -5'
757 3' -44 NC_000852.3 + 179046 0.75 0.99936
Target:  5'- gUAGGCAGAGGCGcgccAGACG-GCGAACa -3'
miRNA:   3'- -GUUUGUCUCUGCu---UCUGCuUGUUUGg -5'
757 3' -44 NC_000852.3 + 283247 0.75 0.999584
Target:  5'- aAAACAGAGACGAAacgugcguuCGAGCAcacGCCa -3'
miRNA:   3'- gUUUGUCUCUGCUUcu-------GCUUGUu--UGG- -5'
757 3' -44 NC_000852.3 + 81479 0.74 0.999874
Target:  5'- aAGACuGAGACGGugaagacugAGAUGGugAAGCCc -3'
miRNA:   3'- gUUUGuCUCUGCU---------UCUGCUugUUUGG- -5'
757 3' -44 NC_000852.3 + 241723 0.73 0.99994
Target:  5'- -cGACGGAGACGuauguguuucuGACGAauacaACGAGCCc -3'
miRNA:   3'- guUUGUCUCUGCuu---------CUGCU-----UGUUUGG- -5'
757 3' -44 NC_000852.3 + 282140 0.73 0.999958
Target:  5'- ----aGGAGugGAuGACGGcauACGAGCCg -3'
miRNA:   3'- guuugUCUCugCUuCUGCU---UGUUUGG- -5'
757 3' -44 NC_000852.3 + 100403 0.73 0.999958
Target:  5'- aCAAGCGGcuGACGAAGACGucggaAAGCUc -3'
miRNA:   3'- -GUUUGUCu-CUGCUUCUGCuug--UUUGG- -5'
757 3' -44 NC_000852.3 + 245715 0.73 0.999958
Target:  5'- --uGCAGAGAacaCGggGAUGGACuuuCCa -3'
miRNA:   3'- guuUGUCUCU---GCuuCUGCUUGuuuGG- -5'
757 3' -44 NC_000852.3 + 277673 0.72 0.999983
Target:  5'- gAGAUGGAGAuucCGGAGAUGGACAuuGACg -3'
miRNA:   3'- gUUUGUCUCU---GCUUCUGCUUGU--UUGg -5'
757 3' -44 NC_000852.3 + 44934 0.72 0.999987
Target:  5'- -cGACGGAGAUGAcugcGACGAuGCAuGCCc -3'
miRNA:   3'- guUUGUCUCUGCUu---CUGCU-UGUuUGG- -5'
757 3' -44 NC_000852.3 + 175526 0.72 0.999987
Target:  5'- aCAAGCu--GugGGAGAgcaUGAACAAACCc -3'
miRNA:   3'- -GUUUGucuCugCUUCU---GCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 234907 0.71 0.999995
Target:  5'- gAGACAuacccugcaauuGAgGGCGAGGAC-AACAAGCCa -3'
miRNA:   3'- gUUUGU------------CU-CUGCUUCUGcUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 51232 0.71 0.999996
Target:  5'- -uGACGGuGAUGAGGACGAugAuaugaggauggcuGCCg -3'
miRNA:   3'- guUUGUCuCUGCUUCUGCUugUu------------UGG- -5'
757 3' -44 NC_000852.3 + 190940 0.71 0.999997
Target:  5'- -uAAUAGGGAauacaacuauuGACGAACAAACCa -3'
miRNA:   3'- guUUGUCUCUgcuu-------CUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 165160 0.7 0.999999
Target:  5'- -uGAUAGcGACGggGGuCGAacccGCGAACCc -3'
miRNA:   3'- guUUGUCuCUGCuuCU-GCU----UGUUUGG- -5'
757 3' -44 NC_000852.3 + 20178 0.7 0.999999
Target:  5'- ---uCAGAGACGuuGGCGGuauCAAACa -3'
miRNA:   3'- guuuGUCUCUGCuuCUGCUu--GUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.