Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
757 | 3' | -44 | NC_000852.3 | + | 211716 | 0.78 | 0.995351 |
Target: 5'- gCAAAgGGuuGACGAGuACGAACAAACCu -3' miRNA: 3'- -GUUUgUCu-CUGCUUcUGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 182406 | 0.68 | 1 |
Target: 5'- ---uUAGAGuuCGAAaaACGAACGAACCa -3' miRNA: 3'- guuuGUCUCu-GCUUc-UGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 74916 | 0.67 | 1 |
Target: 5'- cCAAACAcGGGAUGAAGGuCG-GCGAAUg -3' miRNA: 3'- -GUUUGU-CUCUGCUUCU-GCuUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 85884 | 0.66 | 1 |
Target: 5'- aUAAAcCAGGGuucaugaAUGAAGAUG-GCGAACCa -3' miRNA: 3'- -GUUU-GUCUC-------UGCUUCUGCuUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 179046 | 0.75 | 0.99936 |
Target: 5'- gUAGGCAGAGGCGcgccAGACG-GCGAACa -3' miRNA: 3'- -GUUUGUCUCUGCu---UCUGCuUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 81479 | 0.74 | 0.999874 |
Target: 5'- aAGACuGAGACGGugaagacugAGAUGGugAAGCCc -3' miRNA: 3'- gUUUGuCUCUGCU---------UCUGCUugUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 44934 | 0.72 | 0.999987 |
Target: 5'- -cGACGGAGAUGAcugcGACGAuGCAuGCCc -3' miRNA: 3'- guUUGUCUCUGCUu---CUGCU-UGUuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 51232 | 0.71 | 0.999996 |
Target: 5'- -uGACGGuGAUGAGGACGAugAuaugaggauggcuGCCg -3' miRNA: 3'- guUUGUCuCUGCUUCUGCUugUu------------UGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 115626 | 0.69 | 1 |
Target: 5'- --uGCAGGuauGACGAAGACGGA---ACCc -3' miRNA: 3'- guuUGUCU---CUGCUUCUGCUUguuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190457 | 0.68 | 1 |
Target: 5'- --uGCAGAGAagcuauccAGGCGAACAGAUg -3' miRNA: 3'- guuUGUCUCUgcu-----UCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 40408 | 0.68 | 1 |
Target: 5'- gAAACGuuGACu-AGACGAGCGAGCa -3' miRNA: 3'- gUUUGUcuCUGcuUCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 128595 | 0.7 | 1 |
Target: 5'- aGAAgAGAGACGugaccGACGAcgACAuACCc -3' miRNA: 3'- gUUUgUCUCUGCuu---CUGCU--UGUuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 132795 | 0.77 | 0.997125 |
Target: 5'- ---cCGGAGACG-AGugGAGCGAcuACCa -3' miRNA: 3'- guuuGUCUCUGCuUCugCUUGUU--UGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190694 | 0.68 | 1 |
Target: 5'- gGAAaAGGGAUGAugacucuGAUGAugAAGCCg -3' miRNA: 3'- gUUUgUCUCUGCUu------CUGCUugUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 75171 | 0.77 | 0.997573 |
Target: 5'- cCAAACAcGGGAUGAAGGuCGGugAAGCUg -3' miRNA: 3'- -GUUUGU-CUCUGCUUCU-GCUugUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190940 | 0.71 | 0.999997 |
Target: 5'- -uAAUAGGGAauacaacuauuGACGAACAAACCa -3' miRNA: 3'- guUUGUCUCUgcuu-------CUGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 98588 | 0.68 | 1 |
Target: 5'- cCAuACGuGAGucCGAcGACGAGCGAACg -3' miRNA: 3'- -GUuUGU-CUCu-GCUuCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 302885 | 0.68 | 1 |
Target: 5'- aCGGACAGA----AAGACGAACAagGACUg -3' miRNA: 3'- -GUUUGUCUcugcUUCUGCUUGU--UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 74671 | 0.76 | 0.998829 |
Target: 5'- cCAAACAcGGGAUGAAGGuCGGAgAAGCUg -3' miRNA: 3'- -GUUUGU-CUCUGCUUCU-GCUUgUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 100403 | 0.73 | 0.999958 |
Target: 5'- aCAAGCGGcuGACGAAGACGucggaAAGCUc -3' miRNA: 3'- -GUUUGUCu-CUGCUUCUGCuug--UUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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