miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 1818 0.66 1
Target:  5'- -uAGCGGAG-CGuagGGGCGcgcguGACAAGCCc -3'
miRNA:   3'- guUUGUCUCuGCu--UCUGC-----UUGUUUGG- -5'
757 3' -44 NC_000852.3 + 18595 0.66 1
Target:  5'- -cAACAGAGAuCGAAuuuGCGAAUAAAUUu -3'
miRNA:   3'- guUUGUCUCU-GCUUc--UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 20178 0.7 0.999999
Target:  5'- ---uCAGAGACGuuGGCGGuauCAAACa -3'
miRNA:   3'- guuuGUCUCUGCuuCUGCUu--GUUUGg -5'
757 3' -44 NC_000852.3 + 24300 0.67 1
Target:  5'- ---gUAGaAGACGuugGAGACG-ACGAACCu -3'
miRNA:   3'- guuuGUC-UCUGC---UUCUGCuUGUUUGG- -5'
757 3' -44 NC_000852.3 + 40408 0.68 1
Target:  5'- gAAACGuuGACu-AGACGAGCGAGCa -3'
miRNA:   3'- gUUUGUcuCUGcuUCUGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 44934 0.72 0.999987
Target:  5'- -cGACGGAGAUGAcugcGACGAuGCAuGCCc -3'
miRNA:   3'- guUUGUCUCUGCUu---CUGCU-UGUuUGG- -5'
757 3' -44 NC_000852.3 + 51232 0.71 0.999996
Target:  5'- -uGACGGuGAUGAGGACGAugAuaugaggauggcuGCCg -3'
miRNA:   3'- guUUGUCuCUGCUUCUGCUugUu------------UGG- -5'
757 3' -44 NC_000852.3 + 57994 0.67 1
Target:  5'- ---cCGGGGGCGGAaaAUGAGCGAACUc -3'
miRNA:   3'- guuuGUCUCUGCUUc-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 61138 0.66 1
Target:  5'- --cGCGGGuuuucgcucGACGuauGACGAACAaGACCa -3'
miRNA:   3'- guuUGUCU---------CUGCuu-CUGCUUGU-UUGG- -5'
757 3' -44 NC_000852.3 + 68748 0.67 1
Target:  5'- aCGAAU-GuGACGAGGcACGGACGAAUUu -3'
miRNA:   3'- -GUUUGuCuCUGCUUC-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 71241 0.66 1
Target:  5'- uCGAACAGAGAauGAGA-GAGCAucuGCg -3'
miRNA:   3'- -GUUUGUCUCUgcUUCUgCUUGUu--UGg -5'
757 3' -44 NC_000852.3 + 74671 0.76 0.998829
Target:  5'- cCAAACAcGGGAUGAAGGuCGGAgAAGCUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCUUgUUUGG- -5'
757 3' -44 NC_000852.3 + 74916 0.67 1
Target:  5'- cCAAACAcGGGAUGAAGGuCG-GCGAAUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCuUGUUUGg -5'
757 3' -44 NC_000852.3 + 75171 0.77 0.997573
Target:  5'- cCAAACAcGGGAUGAAGGuCGGugAAGCUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCUugUUUGG- -5'
757 3' -44 NC_000852.3 + 79956 0.67 1
Target:  5'- uGAAUcGAGACGuuugccccgcaagaAAGACGAGCAcGCg -3'
miRNA:   3'- gUUUGuCUCUGC--------------UUCUGCUUGUuUGg -5'
757 3' -44 NC_000852.3 + 81479 0.74 0.999874
Target:  5'- aAGACuGAGACGGugaagacugAGAUGGugAAGCCc -3'
miRNA:   3'- gUUUGuCUCUGCU---------UCUGCUugUUUGG- -5'
757 3' -44 NC_000852.3 + 81745 0.69 1
Target:  5'- --uGCAGGGGCGuccAAGACGAcagcGCGggUCu -3'
miRNA:   3'- guuUGUCUCUGC---UUCUGCU----UGUuuGG- -5'
757 3' -44 NC_000852.3 + 85884 0.66 1
Target:  5'- aUAAAcCAGGGuucaugaAUGAAGAUG-GCGAACCa -3'
miRNA:   3'- -GUUU-GUCUC-------UGCUUCUGCuUGUUUGG- -5'
757 3' -44 NC_000852.3 + 98588 0.68 1
Target:  5'- cCAuACGuGAGucCGAcGACGAGCGAACg -3'
miRNA:   3'- -GUuUGU-CUCu-GCUuCUGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 100403 0.73 0.999958
Target:  5'- aCAAGCGGcuGACGAAGACGucggaAAGCUc -3'
miRNA:   3'- -GUUUGUCu-CUGCUUCUGCuug--UUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.