miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 328926 0.66 1
Target:  5'- -uAGCGGAG-CGuagGGGCGcgcguGACAAGCCc -3'
miRNA:   3'- guUUGUCUCuGCu--UCUGC-----UUGUUUGG- -5'
757 3' -44 NC_000852.3 + 320055 0.67 1
Target:  5'- cCGAACGGGGGUGGu-GCGAucgGCAAGCCc -3'
miRNA:   3'- -GUUUGUCUCUGCUucUGCU---UGUUUGG- -5'
757 3' -44 NC_000852.3 + 307651 0.69 1
Target:  5'- uGAACAGAacCGAGaACGAuCAGACCa -3'
miRNA:   3'- gUUUGUCUcuGCUUcUGCUuGUUUGG- -5'
757 3' -44 NC_000852.3 + 302885 0.68 1
Target:  5'- aCGGACAGA----AAGACGAACAagGACUg -3'
miRNA:   3'- -GUUUGUCUcugcUUCUGCUUGU--UUGG- -5'
757 3' -44 NC_000852.3 + 283247 0.75 0.999584
Target:  5'- aAAACAGAGACGAAacgugcguuCGAGCAcacGCCa -3'
miRNA:   3'- gUUUGUCUCUGCUUcu-------GCUUGUu--UGG- -5'
757 3' -44 NC_000852.3 + 282140 0.73 0.999958
Target:  5'- ----aGGAGugGAuGACGGcauACGAGCCg -3'
miRNA:   3'- guuugUCUCugCUuCUGCU---UGUUUGG- -5'
757 3' -44 NC_000852.3 + 277673 0.72 0.999983
Target:  5'- gAGAUGGAGAuucCGGAGAUGGACAuuGACg -3'
miRNA:   3'- gUUUGUCUCU---GCUUCUGCUUGU--UUGg -5'
757 3' -44 NC_000852.3 + 276239 0.69 1
Target:  5'- -uAugGGGGAUGAAuGugGAAUuuGCCu -3'
miRNA:   3'- guUugUCUCUGCUU-CugCUUGuuUGG- -5'
757 3' -44 NC_000852.3 + 272478 0.67 1
Target:  5'- gCAAACcgaaAGAGGCGAGcGACaucaaGAACAAgaaauGCCa -3'
miRNA:   3'- -GUUUG----UCUCUGCUU-CUG-----CUUGUU-----UGG- -5'
757 3' -44 NC_000852.3 + 246037 0.67 1
Target:  5'- aCAAAacggaGGAGACuGAGGCGAAUGuaaucGCCa -3'
miRNA:   3'- -GUUUg----UCUCUGcUUCUGCUUGUu----UGG- -5'
757 3' -44 NC_000852.3 + 245715 0.73 0.999958
Target:  5'- --uGCAGAGAacaCGggGAUGGACuuuCCa -3'
miRNA:   3'- guuUGUCUCU---GCuuCUGCUUGuuuGG- -5'
757 3' -44 NC_000852.3 + 241723 0.73 0.99994
Target:  5'- -cGACGGAGACGuauguguuucuGACGAauacaACGAGCCc -3'
miRNA:   3'- guUUGUCUCUGCuu---------CUGCU-----UGUUUGG- -5'
757 3' -44 NC_000852.3 + 234907 0.71 0.999995
Target:  5'- gAGACAuacccugcaauuGAgGGCGAGGAC-AACAAGCCa -3'
miRNA:   3'- gUUUGU------------CU-CUGCUUCUGcUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 221400 0.67 1
Target:  5'- aAAAguGAuuuGGCGAu--CGAACAGGCCg -3'
miRNA:   3'- gUUUguCU---CUGCUucuGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 211716 0.78 0.995351
Target:  5'- gCAAAgGGuuGACGAGuACGAACAAACCu -3'
miRNA:   3'- -GUUUgUCu-CUGCUUcUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 209451 0.67 1
Target:  5'- -uAACAGAGcauACGAAcGACGAGgGAaaaauACCu -3'
miRNA:   3'- guUUGUCUC---UGCUU-CUGCUUgUU-----UGG- -5'
757 3' -44 NC_000852.3 + 200499 0.67 1
Target:  5'- aGAGCucauucGAGACGuuuGACGAACuuguCCg -3'
miRNA:   3'- gUUUGu-----CUCUGCuu-CUGCUUGuuu-GG- -5'
757 3' -44 NC_000852.3 + 196398 0.66 1
Target:  5'- -cAGCAGAGgauguuccagauuACGAAGACGA-CGAGg- -3'
miRNA:   3'- guUUGUCUC-------------UGCUUCUGCUuGUUUgg -5'
757 3' -44 NC_000852.3 + 190940 0.71 0.999997
Target:  5'- -uAAUAGGGAauacaacuauuGACGAACAAACCa -3'
miRNA:   3'- guUUGUCUCUgcuu-------CUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 190694 0.68 1
Target:  5'- gGAAaAGGGAUGAugacucuGAUGAugAAGCCg -3'
miRNA:   3'- gUUUgUCUCUGCUu------CUGCUugUUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.