miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 111025 0.67 1
Target:  5'- aAAACAGcGAUGuauuuGGGCGAGCGAGa- -3'
miRNA:   3'- gUUUGUCuCUGCu----UCUGCUUGUUUgg -5'
757 3' -44 NC_000852.3 + 113952 0.69 1
Target:  5'- -----cGGGACGAAGAUGGcCAuAGCCa -3'
miRNA:   3'- guuuguCUCUGCUUCUGCUuGU-UUGG- -5'
757 3' -44 NC_000852.3 + 115626 0.69 1
Target:  5'- --uGCAGGuauGACGAAGACGGA---ACCc -3'
miRNA:   3'- guuUGUCU---CUGCUUCUGCUUguuUGG- -5'
757 3' -44 NC_000852.3 + 128595 0.7 1
Target:  5'- aGAAgAGAGACGugaccGACGAcgACAuACCc -3'
miRNA:   3'- gUUUgUCUCUGCuu---CUGCU--UGUuUGG- -5'
757 3' -44 NC_000852.3 + 130819 0.66 1
Target:  5'- aAAGCAGA--UGAuGACGAAUggaAAACCa -3'
miRNA:   3'- gUUUGUCUcuGCUuCUGCUUG---UUUGG- -5'
757 3' -44 NC_000852.3 + 132449 0.66 1
Target:  5'- aAAugAGAGACGcAGGAgGGucguGgGGGCCg -3'
miRNA:   3'- gUUugUCUCUGC-UUCUgCU----UgUUUGG- -5'
757 3' -44 NC_000852.3 + 132795 0.77 0.997125
Target:  5'- ---cCGGAGACG-AGugGAGCGAcuACCa -3'
miRNA:   3'- guuuGUCUCUGCuUCugCUUGUU--UGG- -5'
757 3' -44 NC_000852.3 + 152374 0.67 1
Target:  5'- -uGAUAGGGACGAcuACGAugAGAg- -3'
miRNA:   3'- guUUGUCUCUGCUucUGCUugUUUgg -5'
757 3' -44 NC_000852.3 + 156239 0.7 0.999999
Target:  5'- aAGugAGcGACGAAGACGAu---GCCc -3'
miRNA:   3'- gUUugUCuCUGCUUCUGCUuguuUGG- -5'
757 3' -44 NC_000852.3 + 158919 1.16 0.044551
Target:  5'- cCAAACAGAGACGAAGACGAACAAACCa -3'
miRNA:   3'- -GUUUGUCUCUGCUUCUGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 161687 0.67 1
Target:  5'- aGGACAucaaccuugucguuGAGGaacuCGAGGgcuGCGGACAGACCa -3'
miRNA:   3'- gUUUGU--------------CUCU----GCUUC---UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 161820 0.67 1
Target:  5'- aGAAgAGucuuGGCGGAGACGAu---ACCa -3'
miRNA:   3'- gUUUgUCu---CUGCUUCUGCUuguuUGG- -5'
757 3' -44 NC_000852.3 + 165160 0.7 0.999999
Target:  5'- -uGAUAGcGACGggGGuCGAacccGCGAACCc -3'
miRNA:   3'- guUUGUCuCUGCuuCU-GCU----UGUUUGG- -5'
757 3' -44 NC_000852.3 + 165648 0.67 1
Target:  5'- cUAAACGGGGAaacgacaccaacCGggGuCGAACcgguGACCu -3'
miRNA:   3'- -GUUUGUCUCU------------GCuuCuGCUUGu---UUGG- -5'
757 3' -44 NC_000852.3 + 166424 0.67 1
Target:  5'- uUAAACGGAGccaAUGuGGuCGAACAAGCg -3'
miRNA:   3'- -GUUUGUCUC---UGCuUCuGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 170780 0.7 1
Target:  5'- -cAAUAGAGAUGu-GACGAAUaccguGAACCu -3'
miRNA:   3'- guUUGUCUCUGCuuCUGCUUG-----UUUGG- -5'
757 3' -44 NC_000852.3 + 175526 0.72 0.999987
Target:  5'- aCAAGCu--GugGGAGAgcaUGAACAAACCc -3'
miRNA:   3'- -GUUUGucuCugCUUCU---GCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 179046 0.75 0.99936
Target:  5'- gUAGGCAGAGGCGcgccAGACG-GCGAACa -3'
miRNA:   3'- -GUUUGUCUCUGCu---UCUGCuUGUUUGg -5'
757 3' -44 NC_000852.3 + 182406 0.68 1
Target:  5'- ---uUAGAGuuCGAAaaACGAACGAACCa -3'
miRNA:   3'- guuuGUCUCu-GCUUc-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 185824 0.67 1
Target:  5'- cCGAAUAc-GACGAuGaAUGAACAAACCa -3'
miRNA:   3'- -GUUUGUcuCUGCUuC-UGCUUGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.