Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
757 | 3' | -44 | NC_000852.3 | + | 320055 | 0.67 | 1 |
Target: 5'- cCGAACGGGGGUGGu-GCGAucgGCAAGCCc -3' miRNA: 3'- -GUUUGUCUCUGCUucUGCU---UGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 182406 | 0.68 | 1 |
Target: 5'- ---uUAGAGuuCGAAaaACGAACGAACCa -3' miRNA: 3'- guuuGUCUCu-GCUUc-UGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190694 | 0.68 | 1 |
Target: 5'- gGAAaAGGGAUGAugacucuGAUGAugAAGCCg -3' miRNA: 3'- gUUUgUCUCUGCUu------CUGCUugUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 328926 | 0.66 | 1 |
Target: 5'- -uAGCGGAG-CGuagGGGCGcgcguGACAAGCCc -3' miRNA: 3'- guUUGUCUCuGCu--UCUGC-----UUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 246037 | 0.67 | 1 |
Target: 5'- aCAAAacggaGGAGACuGAGGCGAAUGuaaucGCCa -3' miRNA: 3'- -GUUUg----UCUCUGcUUCUGCUUGUu----UGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 40408 | 0.68 | 1 |
Target: 5'- gAAACGuuGACu-AGACGAGCGAGCa -3' miRNA: 3'- gUUUGUcuCUGcuUCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 18595 | 0.66 | 1 |
Target: 5'- -cAACAGAGAuCGAAuuuGCGAAUAAAUUu -3' miRNA: 3'- guUUGUCUCU-GCUUc--UGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 113952 | 0.69 | 1 |
Target: 5'- -----cGGGACGAAGAUGGcCAuAGCCa -3' miRNA: 3'- guuuguCUCUGCUUCUGCUuGU-UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 115626 | 0.69 | 1 |
Target: 5'- --uGCAGGuauGACGAAGACGGA---ACCc -3' miRNA: 3'- guuUGUCU---CUGCUUCUGCUUguuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 196398 | 0.66 | 1 |
Target: 5'- -cAGCAGAGgauguuccagauuACGAAGACGA-CGAGg- -3' miRNA: 3'- guUUGUCUC-------------UGCUUCUGCUuGUUUgg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 98588 | 0.68 | 1 |
Target: 5'- cCAuACGuGAGucCGAcGACGAGCGAACg -3' miRNA: 3'- -GUuUGU-CUCu-GCUuCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 24300 | 0.67 | 1 |
Target: 5'- ---gUAGaAGACGuugGAGACG-ACGAACCu -3' miRNA: 3'- guuuGUC-UCUGC---UUCUGCuUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 165648 | 0.67 | 1 |
Target: 5'- cUAAACGGGGAaacgacaccaacCGggGuCGAACcgguGACCu -3' miRNA: 3'- -GUUUGUCUCU------------GCuuCuGCUUGu---UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 221400 | 0.67 | 1 |
Target: 5'- aAAAguGAuuuGGCGAu--CGAACAGGCCg -3' miRNA: 3'- gUUUguCU---CUGCUucuGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 283247 | 0.75 | 0.999584 |
Target: 5'- aAAACAGAGACGAAacgugcguuCGAGCAcacGCCa -3' miRNA: 3'- gUUUGUCUCUGCUUcu-------GCUUGUu--UGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 200499 | 0.67 | 1 |
Target: 5'- aGAGCucauucGAGACGuuuGACGAACuuguCCg -3' miRNA: 3'- gUUUGu-----CUCUGCuu-CUGCUUGuuu-GG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 277673 | 0.72 | 0.999983 |
Target: 5'- gAGAUGGAGAuucCGGAGAUGGACAuuGACg -3' miRNA: 3'- gUUUGUCUCU---GCUUCUGCUUGU--UUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 245715 | 0.73 | 0.999958 |
Target: 5'- --uGCAGAGAacaCGggGAUGGACuuuCCa -3' miRNA: 3'- guuUGUCUCU---GCuuCUGCUUGuuuGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 282140 | 0.73 | 0.999958 |
Target: 5'- ----aGGAGugGAuGACGGcauACGAGCCg -3' miRNA: 3'- guuugUCUCugCUuCUGCU---UGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 241723 | 0.73 | 0.99994 |
Target: 5'- -cGACGGAGACGuauguguuucuGACGAauacaACGAGCCc -3' miRNA: 3'- guUUGUCUCUGCuu---------CUGCU-----UGUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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