Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
757 | 3' | -44 | NC_000852.3 | + | 161820 | 0.67 | 1 |
Target: 5'- aGAAgAGucuuGGCGGAGACGAu---ACCa -3' miRNA: 3'- gUUUgUCu---CUGCUUCUGCUuguuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 57994 | 0.67 | 1 |
Target: 5'- ---cCGGGGGCGGAaaAUGAGCGAACUc -3' miRNA: 3'- guuuGUCUCUGCUUc-UGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 79956 | 0.67 | 1 |
Target: 5'- uGAAUcGAGACGuuugccccgcaagaAAGACGAGCAcGCg -3' miRNA: 3'- gUUUGuCUCUGC--------------UUCUGCUUGUuUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 111025 | 0.67 | 1 |
Target: 5'- aAAACAGcGAUGuauuuGGGCGAGCGAGa- -3' miRNA: 3'- gUUUGUCuCUGCu----UCUGCUUGUUUgg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 221400 | 0.67 | 1 |
Target: 5'- aAAAguGAuuuGGCGAu--CGAACAGGCCg -3' miRNA: 3'- gUUUguCU---CUGCUucuGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 165648 | 0.67 | 1 |
Target: 5'- cUAAACGGGGAaacgacaccaacCGggGuCGAACcgguGACCu -3' miRNA: 3'- -GUUUGUCUCU------------GCuuCuGCUUGu---UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 24300 | 0.67 | 1 |
Target: 5'- ---gUAGaAGACGuugGAGACG-ACGAACCu -3' miRNA: 3'- guuuGUC-UCUGC---UUCUGCuUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190694 | 0.68 | 1 |
Target: 5'- gGAAaAGGGAUGAugacucuGAUGAugAAGCCg -3' miRNA: 3'- gUUUgUCUCUGCUu------CUGCUugUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 40408 | 0.68 | 1 |
Target: 5'- gAAACGuuGACu-AGACGAGCGAGCa -3' miRNA: 3'- gUUUGUcuCUGcuUCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 302885 | 0.68 | 1 |
Target: 5'- aCGGACAGA----AAGACGAACAagGACUg -3' miRNA: 3'- -GUUUGUCUcugcUUCUGCUUGU--UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 190457 | 0.68 | 1 |
Target: 5'- --uGCAGAGAagcuauccAGGCGAACAGAUg -3' miRNA: 3'- guuUGUCUCUgcu-----UCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 182406 | 0.68 | 1 |
Target: 5'- ---uUAGAGuuCGAAaaACGAACGAACCa -3' miRNA: 3'- guuuGUCUCu-GCUUc-UGCUUGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 98588 | 0.68 | 1 |
Target: 5'- cCAuACGuGAGucCGAcGACGAGCGAACg -3' miRNA: 3'- -GUuUGU-CUCu-GCUuCUGCUUGUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 113952 | 0.69 | 1 |
Target: 5'- -----cGGGACGAAGAUGGcCAuAGCCa -3' miRNA: 3'- guuuguCUCUGCUUCUGCUuGU-UUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 115626 | 0.69 | 1 |
Target: 5'- --uGCAGGuauGACGAAGACGGA---ACCc -3' miRNA: 3'- guuUGUCU---CUGCUUCUGCUUguuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 307651 | 0.69 | 1 |
Target: 5'- uGAACAGAacCGAGaACGAuCAGACCa -3' miRNA: 3'- gUUUGUCUcuGCUUcUGCUuGUUUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 276239 | 0.69 | 1 |
Target: 5'- -uAugGGGGAUGAAuGugGAAUuuGCCu -3' miRNA: 3'- guUugUCUCUGCUU-CugCUUGuuUGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 81745 | 0.69 | 1 |
Target: 5'- --uGCAGGGGCGuccAAGACGAcagcGCGggUCu -3' miRNA: 3'- guuUGUCUCUGC---UUCUGCU----UGUuuGG- -5' |
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757 | 3' | -44 | NC_000852.3 | + | 20178 | 0.7 | 0.999999 |
Target: 5'- ---uCAGAGACGuuGGCGGuauCAAACa -3' miRNA: 3'- guuuGUCUCUGCuuCUGCUu--GUUUGg -5' |
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757 | 3' | -44 | NC_000852.3 | + | 156239 | 0.7 | 0.999999 |
Target: 5'- aAGugAGcGACGAAGACGAu---GCCc -3' miRNA: 3'- gUUugUCuCUGCUUCUGCUuguuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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