miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7570 5' -40.2 NC_001962.1 + 23303 0.7 0.999997
Target:  5'- --cGAUcuUGCgUUACAAGUAGAAUUu -3'
miRNA:   3'- aaaCUAacACGaAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 24277 0.71 0.999993
Target:  5'- --------cGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaacuaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 24376 0.71 0.999993
Target:  5'- --------cGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaacuaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 64914 0.71 0.999978
Target:  5'- --------cGCUUUACAAGUAGAAUUc -3'
miRNA:   3'- aaacuaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 86674 0.71 0.999978
Target:  5'- --------cGCUUUACAAGUAGAAUUc -3'
miRNA:   3'- aaacuaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 124227 0.72 0.999969
Target:  5'- -cUGAacucGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 124119 0.72 0.999969
Target:  5'- -cUGAacucGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 124011 0.72 0.999969
Target:  5'- -cUGAacccGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 123910 0.72 0.999969
Target:  5'- -cUGAacucGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 65229 0.72 0.999969
Target:  5'- -cUGAacucGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 24176 0.72 0.999969
Target:  5'- -cUGAacucGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 124385 0.72 0.99994
Target:  5'- --------cGCUUUACGAGUAGAAUUa -3'
miRNA:   3'- aaacuaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 22645 0.74 0.999437
Target:  5'- cUUGAUUGUGUUUUACAcGU-GAAUUc -3'
miRNA:   3'- aAACUAACACGAAAUGUuCAuCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 123766 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 86609 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 86536 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 65328 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 65120 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 65048 0.74 0.999284
Target:  5'- -cUGAaccgGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 123838 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.