Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
760 | 5' | -52.4 | NC_000852.3 | + | 245490 | 0.7 | 0.984533 |
Target: 5'- cGGAGAACCaaugCCGAccaugccacaccAGUugCGGuGGAugCa -3' miRNA: 3'- -CCUCUUGG----GGCU------------UCAugGCC-UCUugG- -5' |
|||||||
760 | 5' | -52.4 | NC_000852.3 | + | 284972 | 0.73 | 0.938969 |
Target: 5'- uGAGAA-CCCGAGG-ACCcGAGGACCc -3' miRNA: 3'- cCUCUUgGGGCUUCaUGGcCUCUUGG- -5' |
|||||||
760 | 5' | -52.4 | NC_000852.3 | + | 310124 | 0.68 | 0.996474 |
Target: 5'- cGGAGAACCCCuauaaauuaucgggaGAuuuuggaaacAGUACUcuAGAACCa -3' miRNA: 3'- -CCUCUUGGGG---------------CU----------UCAUGGccUCUUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home