miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 129301 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 129224 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 129147 0.82 0.073789
Target:  5'- ---aCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 128979 0.76 0.181844
Target:  5'- -aCUCGAGCUCGGCcaaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcccGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 127586 0.79 0.125754
Target:  5'- aAGCUCGAGCUCGGCGGuCGCcUAGa- -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCcGCGcAUCcu -5'
7633 3' -61.6 NC_001973.1 + 127512 0.91 0.018411
Target:  5'- ---cUGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 127432 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 127356 0.69 0.496702
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 110351 0.66 0.660963
Target:  5'- cGUUCGccGcCUCGGCGGcCGCGUcGGAc -3'
miRNA:   3'- uCGAGCu-C-GAGCCGCCcGCGCAuCCU- -5'
7633 3' -61.6 NC_001973.1 + 106956 0.66 0.690246
Target:  5'- cAGCgcgccgggCGcGCUCGGCGuGcGCGCGcugcagAGGAa -3'
miRNA:   3'- -UCGa-------GCuCGAGCCGC-C-CGCGCa-----UCCU- -5'
7633 3' -61.6 NC_001973.1 + 106677 0.67 0.610841
Target:  5'- cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc---- -3'
miRNA:   3'- uCGAGCU-------------CG-AGCCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 96880 0.72 0.33841
Target:  5'- uGGCcgCGGaucuguGCgCGGCGGGCGCGUcGGAu -3'
miRNA:   3'- -UCGa-GCU------CGaGCCGCCCGCGCAuCCU- -5'
7633 3' -61.6 NC_001973.1 + 96040 0.83 0.063206
Target:  5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3'
miRNA:   3'- -UCGAGCUCGAgCCGCCc-----GCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 95961 0.66 0.690246
Target:  5'- cGCUuucgaCGAGa-CGGCGGGCGCGcUGGu- -3'
miRNA:   3'- uCGA-----GCUCgaGCCGCCCGCGC-AUCcu -5'
7633 3' -61.6 NC_001973.1 + 95840 0.68 0.57272
Target:  5'- cGGCgaCGGGCcCGGUgccGGGCaCGUGGGAg -3'
miRNA:   3'- -UCGa-GCUCGaGCCG---CCCGcGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 95759 0.69 0.496702
Target:  5'- aAGaUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3'
miRNA:   3'- -UCgAGCuCGAGCCG------------CCCGCGCau-CCU- -5'
7633 3' -61.6 NC_001973.1 + 89101 0.69 0.496702
Target:  5'- cGUcgUCGAGCUCcGCGGGCGCGc---- -3'
miRNA:   3'- uCG--AGCUCGAGcCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 83950 0.71 0.408739
Target:  5'- cGCUCG-Ga--GGCGGGCGCGUcgAGGc -3'
miRNA:   3'- uCGAGCuCgagCCGCCCGCGCA--UCCu -5'
7633 3' -61.6 NC_001973.1 + 83859 0.68 0.534233
Target:  5'- cGCgagCGAGCUCGcccgcGCGcGGCGCGagcucaGGGAg -3'
miRNA:   3'- uCGa--GCUCGAGC-----CGC-CCGCGCa-----UCCU- -5'
7633 3' -61.6 NC_001973.1 + 83808 0.68 0.57272
Target:  5'- cGgaCGAGCUgGGCcGcGCGCGgcGGAg -3'
miRNA:   3'- uCgaGCUCGAgCCGcC-CGCGCauCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.