miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 61185 0.66 0.786289
Target:  5'- cGCuCCucGCUgaacgCGcGCUCgGGCGGGCGCc -3'
miRNA:   3'- -CG-GGuuCGA-----GCuCGAG-CCGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 55930 0.66 0.786289
Target:  5'- gGCUCGGGCUCGAGUaguaCGGacuCGGGCcCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGa---GCC---GCCUGcGC- -5'
7635 3' -60.1 NC_001973.1 + 133264 0.66 0.786289
Target:  5'- cGUCC-AGCUCGGcCUCGGCcgcGGccgagaACGCGg -3'
miRNA:   3'- -CGGGuUCGAGCUcGAGCCG---CC------UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 133504 0.66 0.777385
Target:  5'- cGUCCAcGCUCG-GCUUGuCGGGCaGCa -3'
miRNA:   3'- -CGGGUuCGAGCuCGAGCcGCCUG-CGc -5'
7635 3' -60.1 NC_001973.1 + 45852 0.66 0.777385
Target:  5'- gGCCUggGCgucgCGGGCgcgcgcuccUCGGCcGcGGCGCu -3'
miRNA:   3'- -CGGGuuCGa---GCUCG---------AGCCG-C-CUGCGc -5'
7635 3' -60.1 NC_001973.1 + 45629 0.66 0.777385
Target:  5'- gGUCCAcGCgcucgUCGAGCgCGGCGucguACGCGg -3'
miRNA:   3'- -CGGGUuCG-----AGCUCGaGCCGCc---UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 39457 0.66 0.777385
Target:  5'- uGCCCA-GCUCGAcGUaUCGGU--GCGCGu -3'
miRNA:   3'- -CGGGUuCGAGCU-CG-AGCCGccUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 17243 0.66 0.777385
Target:  5'- aGCCCAuauaaauguaCUCG-GCcgCGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUuc--------GAGCuCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 137255 0.66 0.774689
Target:  5'- gGCUuuCGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGu -3'
miRNA:   3'- -CGG--GUUCGaGCUCGa--GCCGCC--------------UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 123076 0.66 0.771079
Target:  5'- cGCCCGggcgagcAGCUCGcccgacagguacagcGGCagguugUCGGCGcGCGCGa -3'
miRNA:   3'- -CGGGU-------UCGAGC---------------UCG------AGCCGCcUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 89092 0.66 0.768359
Target:  5'- cGUCguuGUcgucgUCGAGCUCcGCGGGCGCGc -3'
miRNA:   3'- -CGGguuCG-----AGCUCGAGcCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 5926 0.66 0.765629
Target:  5'- cGCCCGcggucgcgcgcacgAuGCgCGAcGCggcCGGCGGAUGCGa -3'
miRNA:   3'- -CGGGU--------------U-CGaGCU-CGa--GCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 89557 0.66 0.76289
Target:  5'- cGCCCGAuccuguauagguuucGCUCGcGGUUCaGCGG-CGUGg -3'
miRNA:   3'- -CGGGUU---------------CGAGC-UCGAGcCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 83926 0.66 0.759221
Target:  5'- cGCCUcgAAGCggacaCGGcgcgccGCUCggaGGCGGGCGCGu -3'
miRNA:   3'- -CGGG--UUCGa----GCU------CGAG---CCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 68393 0.66 0.759221
Target:  5'- cGCCCAGGUacagguagaUCGugcGCUCGGC--GCGCu -3'
miRNA:   3'- -CGGGUUCG---------AGCu--CGAGCCGccUGCGc -5'
7635 3' -60.1 NC_001973.1 + 44428 0.66 0.759221
Target:  5'- cGCUCGGGgaUCGAacgggcGCUCGggcGCGGGCGCu -3'
miRNA:   3'- -CGGGUUCg-AGCU------CGAGC---CGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 7854 0.66 0.759221
Target:  5'- cGCCCG---UCGAGCU-GGCgcgccaGGGCGCGu -3'
miRNA:   3'- -CGGGUucgAGCUCGAgCCG------CCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 137189 0.66 0.759221
Target:  5'- cGCUCAgccacucgcGGCgCGAGUcgcgCGGCGG-CGCGu -3'
miRNA:   3'- -CGGGU---------UCGaGCUCGa---GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 5158 0.66 0.756459
Target:  5'- gGCCCAgcugguugguguccGGCgCGAGCcacugcggcacUCuGGUGGGCGCu -3'
miRNA:   3'- -CGGGU--------------UCGaGCUCG-----------AG-CCGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 83060 0.66 0.750908
Target:  5'- aGCCCGcGGCcuccuccuccuccggCGAGCggCGGCGG-CGCc -3'
miRNA:   3'- -CGGGU-UCGa--------------GCUCGa-GCCGCCuGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.