miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 155602 0.66 0.998472
Target:  5'- cGuuGCUUCugAGCuugc-AGCUCGGCc -3'
miRNA:   3'- uCggCGAAG--UUGuuuuuUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 85686 0.66 0.998443
Target:  5'- uGCUGUUguccUCAaaguccuuggcguGCAAAuaGAGGCUCGGCc -3'
miRNA:   3'- uCGGCGA----AGU-------------UGUUU--UUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 62925 0.66 0.998158
Target:  5'- cGCCGaUUCGACuc--GGGC-CGGCGu -3'
miRNA:   3'- uCGGCgAAGUUGuuuuUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 98177 0.66 0.998158
Target:  5'- cGCCGU--CcACGAAAAA-CUCGGCGu -3'
miRNA:   3'- uCGGCGaaGuUGUUUUUUcGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 17546 0.66 0.998158
Target:  5'- cGGCCGCguugaccgUCAACAGcgu-GCacauggaaUCGGCGc -3'
miRNA:   3'- -UCGGCGa-------AGUUGUUuuuuCG--------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 61650 0.66 0.998158
Target:  5'- cGCCGCU---GCGAGAGcAGCU-GGCa -3'
miRNA:   3'- uCGGCGAaguUGUUUUU-UCGAgCCGc -5'
7639 3' -49.3 NC_001973.1 + 8221 0.66 0.99779
Target:  5'- gGGCCGCcaagCcGCGAGAGGuGCugauccgaUCGGCGg -3'
miRNA:   3'- -UCGGCGaa--GuUGUUUUUU-CG--------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 104243 0.66 0.99779
Target:  5'- cGCUGCgcguccgUCAGCu-----GUUCGGCGg -3'
miRNA:   3'- uCGGCGa------AGUUGuuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 82911 0.66 0.99779
Target:  5'- cGCCGCgccCGACcGAcgcGUUCGGCGc -3'
miRNA:   3'- uCGGCGaa-GUUGuUUuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81437 0.66 0.99779
Target:  5'- uGCU-CUUCuuCAAAuaauGCUCGGCGa -3'
miRNA:   3'- uCGGcGAAGuuGUUUuuu-CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 54424 0.66 0.997542
Target:  5'- cAGCCGCUugacgcUCAAUAuuuucaccauGCUgGGCGu -3'
miRNA:   3'- -UCGGCGA------AGUUGUuuuuu-----CGAgCCGC- -5'
7639 3' -49.3 NC_001973.1 + 68910 0.66 0.997364
Target:  5'- uGCCGCgaccacuaucUCAACGucAAGggcuucaucguGCUCGGCGu -3'
miRNA:   3'- uCGGCGa---------AGUUGUuuUUU-----------CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 31383 0.66 0.997364
Target:  5'- cGCCaGCgaCGGCAGAAAAcuGCUCGuGCu -3'
miRNA:   3'- uCGG-CGaaGUUGUUUUUU--CGAGC-CGc -5'
7639 3' -49.3 NC_001973.1 + 72096 0.66 0.997364
Target:  5'- uGCUGCcggUGACAucAucccuaacucGAGCUCGGCGg -3'
miRNA:   3'- uCGGCGaa-GUUGUuuU----------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 158494 0.66 0.99687
Target:  5'- gAGCCGaUUCGACAAGAAacuccgaccGGCUUGuuuGCGc -3'
miRNA:   3'- -UCGGCgAAGUUGUUUUU---------UCGAGC---CGC- -5'
7639 3' -49.3 NC_001973.1 + 158452 0.66 0.99687
Target:  5'- gAGCCGgcUCGuCAAGAAAGUccgaUCGGCu -3'
miRNA:   3'- -UCGGCgaAGUuGUUUUUUCG----AGCCGc -5'
7639 3' -49.3 NC_001973.1 + 99754 0.66 0.99687
Target:  5'- gGGCgCGCgauugUCGAUuc----GCUCGGCGa -3'
miRNA:   3'- -UCG-GCGa----AGUUGuuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 32397 0.66 0.99687
Target:  5'- gGGCUGCUccaCGGCGAc--AGCcCGGCGa -3'
miRNA:   3'- -UCGGCGAa--GUUGUUuuuUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 12401 0.66 0.99687
Target:  5'- aAGCCGaugagaUCAuuccCAAAcuuGAGCUCGGCu -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 104355 0.67 0.996303
Target:  5'- cGGCgGCggCGACGAucAAGCg-GGCGu -3'
miRNA:   3'- -UCGgCGaaGUUGUUuuUUCGagCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.